Literature DB >> 17251153

Explaining a complex living system: dynamics, multi-scaling and emergence.

Irun R Cohen1, David Harel.   

Abstract

Complex living systems are difficult to understand. They obey the laws of physics and chemistry, but these basic laws do not explain their behaviour; each component part of a complex system participates in many different interactions and these interactions generate unforeseeable, emergent properties. For example, microscopic interactions between non-living molecules, at the macroscopic level, produce a living cell. Here we discuss how to explain such complexity in the format of a dynamic model that is mathematically precise, yet understandable. Precise, computer-aided modelling will make it easier to formulate novel experiments and attain understanding and control of key biological processes.

Mesh:

Year:  2007        PMID: 17251153      PMCID: PMC2359859          DOI: 10.1098/rsif.2006.0173

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  8 in total

Review 1.  On the role of feedback in promoting conflicting goals of the adaptive immune system.

Authors:  L A Segel; R L Bar-Or
Journal:  J Immunol       Date:  1999-08-01       Impact factor: 5.422

Review 2.  Simplicity belies a complex system: a response to the minimal model of immunity of Langman and Cohn.

Authors:  Sol Efroni; Irun R Cohen
Journal:  Cell Immunol       Date:  2002 Mar-Apr       Impact factor: 4.868

Review 3.  Sequencing the chimpanzee genome: insights into human evolution and disease.

Authors:  Maynard V Olson; Ajit Varki
Journal:  Nat Rev Genet       Date:  2003-01       Impact factor: 53.242

4.  Toward rigorous comprehension of biological complexity: modeling, execution, and visualization of thymic T-cell maturation.

Authors:  Sol Efroni; David Harel; Irun R Cohen
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

5.  Phylogenetic MCMC algorithms are misleading on mixtures of trees.

Authors:  Elchanan Mossel; Eric Vigoda
Journal:  Science       Date:  2005-09-30       Impact factor: 47.728

6.  Cause and effect in biology.

Authors:  E MAYR
Journal:  Science       Date:  1961-11-10       Impact factor: 47.728

7.  Emergent dynamics of thymocyte development and lineage determination.

Authors:  Sol Efroni; David Harel; Irun R Cohen
Journal:  PLoS Comput Biol       Date:  2006-12-11       Impact factor: 4.475

8.  Informational landscapes in art, science, and evolution.

Authors:  Irun R Cohen
Journal:  Bull Math Biol       Date:  2006-06-08       Impact factor: 1.758

  8 in total
  17 in total

1.  A model of stem cell population dynamics: in silico analysis and in vivo validation.

Authors:  Yaki Setty; Diana Dalfó; Dorota Z Korta; E Jane Albert Hubbard; Hillel Kugler
Journal:  Development       Date:  2012-01       Impact factor: 6.868

Review 2.  Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Authors:  Vipin Narang; James Decraene; Shek-Yoon Wong; Bindu S Aiswarya; Andrew R Wasem; Shiang Rong Leong; Alexandre Gouaillard
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

3.  Four-dimensional realistic modeling of pancreatic organogenesis.

Authors:  Yaki Setty; Irun R Cohen; Yuval Dor; David Harel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-17       Impact factor: 11.205

Review 4.  Cognition and biology: perspectives from information theory.

Authors:  Rodrick Wallace
Journal:  Cogn Process       Date:  2013-06-19

5.  A call to address complexity in prevention science research.

Authors:  Kristen Hassmiller Lich; Elizabeth M Ginexi; Nathaniel D Osgood; Patricia L Mabry
Journal:  Prev Sci       Date:  2013-06

Review 6.  A linear-encoding model explains the variability of the target morphology in regeneration.

Authors:  Daniel Lobo; Mauricio Solano; George A Bubenik; Michael Levin
Journal:  J R Soc Interface       Date:  2014-01-08       Impact factor: 4.118

7.  Translating research into prevention of high-risk behaviors in the presence of complex systems: definitions and systems frameworks.

Authors:  Kriste Hassmiller Lich; Leah Frerichs; Diana Fishbein; Georgiy Bobashev; Mary Ann Pentz
Journal:  Transl Behav Med       Date:  2016-03       Impact factor: 3.046

8.  Systems medicine: the future of medical genomics and healthcare.

Authors:  Charles Auffray; Zhu Chen; Leroy Hood
Journal:  Genome Med       Date:  2009-01-20       Impact factor: 11.117

Review 9.  In-silico models of stem cell and developmental systems.

Authors:  Yaki Setty
Journal:  Theor Biol Med Model       Date:  2014-01-08       Impact factor: 2.432

10.  Modelling biological behaviours with the unified modelling language: an immunological case study and critique.

Authors:  Mark Read; Paul S Andrews; Jon Timmis; Vipin Kumar
Journal:  J R Soc Interface       Date:  2014-10-06       Impact factor: 4.118

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