Literature DB >> 17242514

Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii.

P Gayathri1, Mousumi Banerjee, A Vijayalakshmi, Shamina Azeez, Hemalatha Balaram, P Balaram, M R N Murthy.   

Abstract

The crystal structure of a recombinant triosephosphate isomerase (TIM) from the archaeabacterium Methanocaldococcus jannaschii has been determined at a resolution of 2.3 A using X-ray diffraction data from a tetartohedrally twinned crystal. M. jannaschii TIM (MjTIM) is tetrameric, as suggested by solution studies and from the crystal structure, as is the case for two other structurally characterized archaeal TIMs. The archaeabacterial TIMs are shorter compared with the dimeric TIMs; the insertions in the dimeric TIMs occur in the vicinity of the tetramer interface, resulting in a hindrance to tetramerization in the dimeric TIMs. The charge distribution on the surface of the archaeal TIMs also facilitates tetramerization. Analysis of the barrel interactions in TIMs suggests that these interactions are unlikely to account for the thermal stability of the archaeal TIMs. A novelty of the unliganded structure of MjTIM is the complete absence of electron density for the loop 6 residues. The disorder of this loop could be ascribed to a missing salt bridge between residues at the N- and C-terminal ends of the loop in MjTIM.

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Year:  2007        PMID: 17242514     DOI: 10.1107/S0907444906046488

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  8 in total

1.  Crystallization and preliminary crystallographic analysis of merohedrally twinned crystals of MJ0729, a CBS-domain protein from Methanococcus jannaschii.

Authors:  Pablo Fernández-Millán; Danel Kortazar; María Lucas; María Luz Martínez-Chantar; Egoitz Astigarraga; José Andrés Fernández; Olatz Sabas; Armando Albert; Jose M Mato; Luis Alfonso Martínez-Cruz
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-06-07

2.  The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality.

Authors:  Ataur R Katebi; Robert L Jernigan
Journal:  Protein Sci       Date:  2013-12-31       Impact factor: 6.725

Review 3.  Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.

Authors:  Christopher Bräsen; Dominik Esser; Bernadette Rauch; Bettina Siebers
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

4.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

5.  A ribosomal misincorporation of Lys for Arg in human triosephosphate isomerase expressed in Escherichia coli gives rise to two protein populations.

Authors:  Beatriz Aguirre; Miguel Costas; Nallely Cabrera; Guillermo Mendoza-Hernández; Donald L Helseth; Paulette Fernández; Marietta Tuena de Gómez-Puyou; Ruy Pérez-Montfort; Alfredo Torres-Larios; Armando Gómez Puyou
Journal:  PLoS One       Date:  2011-06-28       Impact factor: 3.240

Review 6.  Tetartohedral twinning could happen to you too.

Authors:  Pietro Roversi; Eric Blanc; Steven Johnson; Susan Mary Lea
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

7.  Enzyme architecture: the effect of replacement and deletion mutations of loop 6 on catalysis by triosephosphate isomerase.

Authors:  Xiang Zhai; Maybelle K Go; AnnMarie C O'Donoghue; Tina L Amyes; Scott D Pegan; Yan Wang; J Patrick Loria; Andrew D Mesecar; John P Richard
Journal:  Biochemistry       Date:  2014-05-22       Impact factor: 3.162

8.  Structure and Stability of the Dimeric Triosephosphate Isomerase from the Thermophilic Archaeon Thermoplasma acidophilum.

Authors:  Sang Ho Park; Hyoun Sook Kim; Mi Seul Park; Sojin Moon; Mi Kyung Song; Han Su Park; Hyunggu Hahn; Soon-Jong Kim; Euiyoung Bae; Hyun-Jung Kim; Byung Woo Han
Journal:  PLoS One       Date:  2015-12-28       Impact factor: 3.240

  8 in total

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