Literature DB >> 17239581

Determination of conformationally heterogeneous states of proteins.

Michele Vendruscolo1.   

Abstract

Although conformationally heterogeneous states of proteins are involved in a range of important biological processes, including protein folding and misfolding, and signal transduction, detailed knowledge of their structure and dynamics is still largely missing. Proteins in many of these states are constantly changing shape, such that they are better described as ensembles of conformations rather than in terms of well-defined structures, as is normally the case for native states. Methods in which molecular simulations are combined with experimental measurements are emerging as a powerful route to the accurate determination of the conformational properties of these states of proteins.

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Year:  2007        PMID: 17239581     DOI: 10.1016/j.sbi.2007.01.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  41 in total

1.  The fractal globule as a model of chromatin architecture in the cell.

Authors:  Leonid A Mirny
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Linking well-tempered metadynamics simulations with experiments.

Authors:  Alessandro Barducci; Massimiliano Bonomi; Michele Parrinello
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Sequence determinants of compaction in intrinsically disordered proteins.

Authors:  Joseph A Marsh; Julie D Forman-Kay
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

4.  Methods of NMR structure refinement: molecular dynamics simulations improve the agreement with measured NMR data of a C-terminal peptide of GCN4-p1.

Authors:  Jozica Dolenc; John H Missimer; Michel O Steinmetz; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2010-06-04       Impact factor: 2.835

5.  Automated electron-density sampling reveals widespread conformational polymorphism in proteins.

Authors:  P Therese Lang; Ho-Leung Ng; James S Fraser; Jacob E Corn; Nathaniel Echols; Mark Sales; James M Holton; Tom Alber
Journal:  Protein Sci       Date:  2010-07       Impact factor: 6.725

6.  A quantitative measure for protein conformational heterogeneity.

Authors:  Nicholas Lyle; Rahul K Das; Rohit V Pappu
Journal:  J Chem Phys       Date:  2013-09-28       Impact factor: 3.488

7.  Identification of fibril-like tertiary contacts in soluble monomeric α-synuclein.

Authors:  Santiago Esteban-Martín; Jordi Silvestre-Ryan; Carlos W Bertoncini; Xavier Salvatella
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

Review 8.  Describing sequence-ensemble relationships for intrinsically disordered proteins.

Authors:  Albert H Mao; Nicholas Lyle; Rohit V Pappu
Journal:  Biochem J       Date:  2013-01-15       Impact factor: 3.857

9.  On the functional significance of soft modes predicted by coarse-grained models for membrane proteins.

Authors:  Ivet Bahar
Journal:  J Gen Physiol       Date:  2010-06       Impact factor: 4.086

Review 10.  Folding versus aggregation: polypeptide conformations on competing pathways.

Authors:  Thomas R Jahn; Sheena E Radford
Journal:  Arch Biochem Biophys       Date:  2007-06-08       Impact factor: 4.013

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