Literature DB >> 17239578

The bacterial transcription repair coupling factor.

Alexandra M Deaconescu1, Nigel Savery, Seth A Darst.   

Abstract

The widely conserved bacterial transcription repair coupling factor (TRCF) is a large, multidomain, superfamily 2 ATPase. It couples nucleotide excision repair with transcription by dislodging inactive RNA polymerase molecules stalled at template DNA lesions and increasing the rate at which the Uvr(A)BC excinuclease acts at these sites. The recent elucidation of X-ray crystal structures of Escherichia coli TRCF revealed its architectural details, and will enable the design of more incisive experiments addressing how TRCF translocates on double-stranded DNA, destabilizes the RNA polymerase ternary elongation complex and recruits the Uvr(A)BC system.

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Year:  2007        PMID: 17239578      PMCID: PMC2757452          DOI: 10.1016/j.sbi.2007.01.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

1.  A DNA translocation motif in the bacterial transcription--repair coupling factor, Mfd.

Authors:  A L Chambers; A J Smith; N J Savery
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

2.  E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation.

Authors:  Joo-Seop Park; Michael T Marr; Jeffrey W Roberts
Journal:  Cell       Date:  2002-06-14       Impact factor: 41.582

3.  Role of E.coli transcription-repair coupling factor Mfd in Nun-mediated transcription termination.

Authors:  Robert S Washburn; Yousong Wang; Max E Gottesman
Journal:  J Mol Biol       Date:  2003-06-13       Impact factor: 5.469

4.  The flap domain is required for pause RNA hairpin inhibition of catalysis by RNA polymerase and can modulate intrinsic termination.

Authors:  Innokenti Toulokhonov; Robert Landick
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

5.  Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading.

Authors:  Emmanuel Skordalakes; James M Berger
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

6.  Interactions between UvrA and UvrB: the role of UvrB's domain 2 in nucleotide excision repair.

Authors:  James J Truglio; Deborah L Croteau; Milan Skorvaga; Matthew J DellaVecchia; Karsten Theis; Bhaskar S Mandavilli; Bennett Van Houten; Caroline Kisker
Journal:  EMBO J       Date:  2004-06-10       Impact factor: 11.598

7.  Forward translocation is the natural pathway of RNA release at an intrinsic terminator.

Authors:  Thomas J Santangelo; Jeffrey W Roberts
Journal:  Mol Cell       Date:  2004-04-09       Impact factor: 17.970

8.  Force and velocity measured for single molecules of RNA polymerase.

Authors:  M D Wang; M J Schnitzer; H Yin; R Landick; J Gelles; S M Block
Journal:  Science       Date:  1998-10-30       Impact factor: 47.728

Review 9.  RNA polymerase as a molecular motor.

Authors:  J Gelles; R Landick
Journal:  Cell       Date:  1998-04-03       Impact factor: 41.582

10.  DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.

Authors:  V A Bohr; C A Smith; D S Okumoto; P C Hanawalt
Journal:  Cell       Date:  1985-02       Impact factor: 41.582

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  21 in total

1.  Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.

Authors:  Alexandra M Deaconescu; Anastasia Sevostyanova; Irina Artsimovitch; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

Review 2.  What happens when replication and transcription complexes collide?

Authors:  Richard T Pomerantz; Mike O'Donnell
Journal:  Cell Cycle       Date:  2010-07-01       Impact factor: 4.534

3.  Derepression of bacterial transcription-repair coupling factor is associated with a profound conformational change.

Authors:  Devendra B Srivastava; Seth A Darst
Journal:  J Mol Biol       Date:  2010-12-23       Impact factor: 5.469

4.  Mfd as a central partner of transcription coupled repair.

Authors:  Jordan Monnet; Wilfried Grange; Terence R Strick; Nicolas Joly
Journal:  Transcription       Date:  2013-05-16

Review 5.  From Mfd to TRCF and Back Again-A Perspective on Bacterial Transcription-coupled Nucleotide Excision Repair.

Authors:  Alexandra M Deaconescu; Margaret M Suhanovsky
Journal:  Photochem Photobiol       Date:  2016-12-27       Impact factor: 3.421

6.  Transcription-coupled nucleotide excision repair of a gene transcribed by bacteriophage T7 RNA polymerase in Escherichia coli.

Authors:  Ann K Ganesan; Philip C Hanawalt
Journal:  DNA Repair (Amst)       Date:  2010-07-17

7.  Differential expression of a putative CarD-like transcriptional regulator, LtpA, in Borrelia burgdorferi.

Authors:  X Frank Yang; Martin S Goldberg; Ming He; Haijun Xu; Jon S Blevins; Michael V Norgard
Journal:  Infect Immun       Date:  2008-07-28       Impact factor: 3.441

8.  Proteomic and physiological responses of Kineococcus radiotolerans to copper.

Authors:  Christopher E Bagwell; Kim K Hixson; Charles E Milliken; Daniel Lopez-Ferrer; Karl K Weitz
Journal:  PLoS One       Date:  2010-08-26       Impact factor: 3.240

Review 9.  Interplay of DNA repair with transcription: from structures to mechanisms.

Authors:  Alexandra M Deaconescu; Irina Artsimovitch; Nikolaus Grigorieff
Journal:  Trends Biochem Sci       Date:  2012-10-17       Impact factor: 13.807

10.  Transcription coupled nucleotide excision repair in Escherichia coli can be affected by changing the arginine at position 529 of the beta subunit of RNA polymerase.

Authors:  Ann K Ganesan; Abigail J Smith; Nigel J Savery; Portia Zamos; Philip C Hanawalt
Journal:  DNA Repair (Amst)       Date:  2007-05-25
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