Literature DB >> 17238769

A natural language processing (NLP) tool to assist in the curation of the laboratory Mouse Tumor Biology Database.

Hua Xu1, Debra Krupke, Judith Blake, Carol Friedman.   

Abstract

A substantial effort of the biological community involves the development of model organism databases containing key genomic information concerning specific organisms. This paper describes a developing natural language processing (NLP) tool, which is aimed at assisting curators of the Mouse Tumor Biology (MTB) Database of the Mouse Genome Informatics (MGI) group by helping them quickly find key information in the articles.

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Mesh：

Year:  2006        PMID： 17238769      PMCID： PMC1839428     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN： 1559-4076


  2 in total

1.  Extracting phenotypic information from the literature via natural language processing.

Authors:  Lifeng Chen; Carol Friedman
Journal:  Stud Health Technol Inform       Date:  2004

Review 2.  The Mouse Tumor Biology Database: a public resource for cancer genetics and pathology of the mouse.

Authors:  Dieter Näf; Debra M Krupke; John P Sundberg; Janan T Eppig; Carol J Bult
Journal:  Cancer Res       Date:  2002-03-01       Impact factor: 12.701
  2 in total
  3 in total

1.  Automating curation using a natural language processing pipeline.

Authors:  Beatrice Alex; Claire Grover; Barry Haddow; Mijail Kabadjov; Ewan Klein; Michael Matthews; Richard Tobin; Xinglong Wang
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583

2.  Tumor and reproductive traits are linked by RNA metabolism genes in the mouse ovary: a transcriptome-phenotype association analysis.

Authors:  Ulises Urzúa; Garrison A Owens; Gen-Mu Zhang; James M Cherry; John J Sharp; David J Munroe
Journal:  BMC Genomics       Date:  2010-12-22       Impact factor: 3.969

3.  Text mining for biology--the way forward: opinions from leading scientists.

Authors:  Russ B Altman; Casey M Bergman; Judith Blake; Christian Blaschke; Aaron Cohen; Frank Gannon; Les Grivell; Udo Hahn; William Hersh; Lynette Hirschman; Lars Juhl Jensen; Martin Krallinger; Barend Mons; Seán I O'Donoghue; Manuel C Peitsch; Dietrich Rebholz-Schuhmann; Hagit Shatkay; Alfonso Valencia
Journal:  Genome Biol       Date:  2008-09-01       Impact factor: 13.583
  3 in total

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