Literature DB >> 17224625

Methods for monitoring autophagy from yeast to human.

Daniel J Klionsky1, Ana Maria Cuervo, Per O Seglen.   

Abstract

The increasing interest in autophagy in a wide range of organisms, accompanied by an ever-growing influx of researchers into this field, necessitates a good understanding of the methodologies available to monitor this process. In this review we discuss current approaches that can be used to follow the overall process of autophagy, as well as individual steps, from yeast to human. The majority of the review considers methods that apply to macroautophagy; however, we also consider alternative types of degradation including chaperone-mediated autophagy and microautophagy. This information is meant to provide a resource for newcomers as well as a stimulus for experienced researchers who may be prompted to develop additional assays to examine autophagy-related pathways.

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Year:  2007        PMID: 17224625     DOI: 10.4161/auto.3678

Source DB:  PubMed          Journal:  Autophagy        ISSN: 1554-8627            Impact factor:   16.016


  260 in total

1.  The PEA-15 protein regulates autophagy via activation of JNK.

Authors:  Barbara C Böck; Katrin E Tagscherer; Anne Fassl; Anika Krämer; Ina Oehme; Hans-Walter Zentgraf; Martina Keith; Wilfried Roth
Journal:  J Biol Chem       Date:  2010-05-07       Impact factor: 5.157

Review 2.  Involvement of autophagy in alcoholic liver injury and hepatitis C pathogenesis.

Authors:  Natalia A Osna; Paul G Thomes; Terrence M Donohue
Journal:  World J Gastroenterol       Date:  2011-05-28       Impact factor: 5.742

3.  A comprehensive glossary of autophagy-related molecules and processes (2nd edition).

Authors:  Daniel J Klionsky; Eric H Baehrecke; John H Brumell; Charleen T Chu; Patrice Codogno; Ana Marie Cuervo; Jayanta Debnath; Vojo Deretic; Zvulun Elazar; Eeva-Liisa Eskelinen; Steven Finkbeiner; Juan Fueyo-Margareto; David Gewirtz; Marja Jäättelä; Guido Kroemer; Beth Levine; Thomas J Melia; Noboru Mizushima; David C Rubinsztein; Anne Simonsen; Andrew Thorburn; Michael Thumm; Sharon A Tooze
Journal:  Autophagy       Date:  2011-11-01       Impact factor: 16.016

4.  Two-site recognition of phosphatidylinositol 3-phosphate by PROPPINs in autophagy.

Authors:  Sulochanadevi Baskaran; Michael J Ragusa; Evzen Boura; James H Hurley
Journal:  Mol Cell       Date:  2012-06-14       Impact factor: 17.970

5.  Heteromultimeric TRPML channel assemblies play a crucial role in the regulation of cell viability models and starvation-induced autophagy.

Authors:  David A Zeevi; Shaya Lev; Ayala Frumkin; Baruch Minke; Gideon Bach
Journal:  J Cell Sci       Date:  2010-08-24       Impact factor: 5.285

6.  Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy.

Authors:  Molly A Lynch-Day; Deepali Bhandari; Shekar Menon; Ju Huang; Huaqing Cai; Clinton R Bartholomew; John H Brumell; Susan Ferro-Novick; Daniel J Klionsky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-07       Impact factor: 11.205

7.  BNIP3L-dependent mitophagy accounts for mitochondrial clearance during 3 factors-induced somatic cell reprogramming.

Authors:  Ge Xiang; Liang Yang; Qi Long; Keshi Chen; Haite Tang; Yi Wu; Zihuang Liu; Yanshuang Zhou; Juntao Qi; Lingjun Zheng; Wenbo Liu; Zhongfu Ying; Weimin Fan; Hongyan Shi; Hongmei Li; Xiaobing Lin; Mi Gao; Jinglei Liu; Feixiang Bao; Linpeng Li; Lifan Duan; Min Li; Xingguo Liu
Journal:  Autophagy       Date:  2017-07-19       Impact factor: 16.016

8.  Linkage of autophagy to fungal development, lipid storage and virulence in Metarhizium robertsii.

Authors:  Zhibing Duan; Yixiong Chen; Wei Huang; Yanfang Shang; Peilin Chen; Chengshu Wang
Journal:  Autophagy       Date:  2013-02-04       Impact factor: 16.016

9.  Autophagy in osteoblasts is involved in mineralization and bone homeostasis.

Authors:  Marie Nollet; Sabine Santucci-Darmanin; Véronique Breuil; Rasha Al-Sahlanee; Chantal Cros; Majlinda Topi; David Momier; Michel Samson; Sophie Pagnotta; Laurence Cailleteau; Séverine Battaglia; Delphine Farlay; Romain Dacquin; Nicolas Barois; Pierre Jurdic; Georges Boivin; Dominique Heymann; Frank Lafont; Shi Shou Lu; David W Dempster; Georges F Carle; Valérie Pierrefite-Carle
Journal:  Autophagy       Date:  2014       Impact factor: 16.016

10.  SUMO1 promotes Aβ production via the modulation of autophagy.

Authors:  Sun-Jung Cho; Sang-Moon Yun; Chulman Jo; Dae-Hoon Lee; Ki Ju Choi; Jae Chun Song; Sang Ick Park; You-Jin Kim; Young Ho Koh
Journal:  Autophagy       Date:  2015       Impact factor: 16.016

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