Literature DB >> 21997368

A comprehensive glossary of autophagy-related molecules and processes (2nd edition).

Daniel J Klionsky1, Eric H Baehrecke, John H Brumell, Charleen T Chu, Patrice Codogno, Ana Marie Cuervo, Jayanta Debnath, Vojo Deretic, Zvulun Elazar, Eeva-Liisa Eskelinen, Steven Finkbeiner, Juan Fueyo-Margareto, David Gewirtz, Marja Jäättelä, Guido Kroemer, Beth Levine, Thomas J Melia, Noboru Mizushima, David C Rubinsztein, Anne Simonsen, Andrew Thorburn, Michael Thumm, Sharon A Tooze.   

Abstract

The study of autophagy is rapidly expanding, and our knowledge of the molecular mechanism and its connections to a wide range of physiological processes has increased substantially in the past decade. The vocabulary associated with autophagy has grown concomitantly. In fact, it is difficult for readers--even those who work in the field--to keep up with the ever-expanding terminology associated with the various autophagy-related processes. Accordingly, we have developed a comprehensive glossary of autophagy-related terms that is meant to provide a quick reference for researchers who need a brief reminder of the regulatory effects of transcription factors and chemical agents that induce or inhibit autophagy, the function of the autophagy-related proteins, and the roles of accessory components and structures that are associated with autophagy.

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Year:  2011        PMID: 21997368      PMCID: PMC3359482          DOI: 10.4161/auto.7.11.17661

Source DB:  PubMed          Journal:  Autophagy        ISSN: 1554-8627            Impact factor:   16.016


  329 in total

1.  Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting.

Authors:  S V Scott; D C Nice; J J Nau; L S Weisman; Y Kamada; I Keizer-Gunnink; T Funakoshi; M Veenhuis; Y Ohsumi; D J Klionsky
Journal:  J Biol Chem       Date:  2000-08-18       Impact factor: 5.157

2.  Role and regulation of starvation-induced autophagy in the Drosophila fat body.

Authors:  Ryan C Scott; Oren Schuldiner; Thomas P Neufeld
Journal:  Dev Cell       Date:  2004-08       Impact factor: 12.270

3.  The melanoma-associated transmembrane glycoprotein Gpnmb controls trafficking of cellular debris for degradation and is essential for tissue repair.

Authors:  Bing Li; Ana P Castano; Thomas E Hudson; Brian T Nowlin; Shuei-Liong Lin; Joseph V Bonventre; Kenneth D Swanson; Jeremy S Duffield
Journal:  FASEB J       Date:  2010-08-13       Impact factor: 5.191

4.  Regulation of autophagic activity by 14-3-3ζ proteins associated with class III phosphatidylinositol-3-kinase.

Authors:  M Pozuelo-Rubio
Journal:  Cell Death Differ       Date:  2010-10-01       Impact factor: 15.828

5.  TRAF6 and A20 regulate lysine 63-linked ubiquitination of Beclin-1 to control TLR4-induced autophagy.

Authors:  Chong-Shan Shi; John H Kehrl
Journal:  Sci Signal       Date:  2010-05-25       Impact factor: 8.192

6.  DJ-1, a cancer and Parkinson's disease associated protein, regulates autophagy through JNK pathway in cancer cells.

Authors:  Haigang Ren; Kai Fu; Chenchen Mu; Bin Li; Dan Wang; Guanghui Wang
Journal:  Cancer Lett       Date:  2010-05-26       Impact factor: 8.679

7.  Modulation of local PtdIns3P levels by the PI phosphatase MTMR3 regulates constitutive autophagy.

Authors:  Naoko Taguchi-Atarashi; Maho Hamasaki; Kohichi Matsunaga; Hiroko Omori; Nicholas T Ktistakis; Tamotsu Yoshimori; Takeshi Noda
Journal:  Traffic       Date:  2010-01-06       Impact factor: 6.215

8.  Cisd2 deficiency drives premature aging and causes mitochondria-mediated defects in mice.

Authors:  Yi-Fan Chen; Cheng-Heng Kao; Ya-Ting Chen; Chih-Hao Wang; Chia-Yu Wu; Ching-Yen Tsai; Fu-Chin Liu; Chu-Wen Yang; Yau-Huei Wei; Ming-Ta Hsu; Shih-Feng Tsai; Ting-Fen Tsai
Journal:  Genes Dev       Date:  2009-05-15       Impact factor: 11.361

Review 9.  Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.

Authors:  Daniel J Klionsky; Hagai Abeliovich; Patrizia Agostinis; Devendra K Agrawal; Gjumrakch Aliev; David S Askew; Misuzu Baba; Eric H Baehrecke; Ben A Bahr; Andrea Ballabio; Bruce A Bamber; Diane C Bassham; Ettore Bergamini; Xiaoning Bi; Martine Biard-Piechaczyk; Janice S Blum; Dale E Bredesen; Jeffrey L Brodsky; John H Brumell; Ulf T Brunk; Wilfried Bursch; Nadine Camougrand; Eduardo Cebollero; Francesco Cecconi; Yingyu Chen; Lih-Shen Chin; Augustine Choi; Charleen T Chu; Jongkyeong Chung; Peter G H Clarke; Robert S B Clark; Steven G Clarke; Corinne Clavé; John L Cleveland; Patrice Codogno; María I Colombo; Ana Coto-Montes; James M Cregg; Ana Maria Cuervo; Jayanta Debnath; Francesca Demarchi; Patrick B Dennis; Phillip A Dennis; Vojo Deretic; Rodney J Devenish; Federica Di Sano; J Fred Dice; Marian Difiglia; Savithramma Dinesh-Kumar; Clark W Distelhorst; Mojgan Djavaheri-Mergny; Frank C Dorsey; Wulf Dröge; Michel Dron; William A Dunn; Michael Duszenko; N Tony Eissa; Zvulun Elazar; Audrey Esclatine; Eeva-Liisa Eskelinen; László Fésüs; Kim D Finley; José M Fuentes; Juan Fueyo; Kozo Fujisaki; Brigitte Galliot; Fen-Biao Gao; David A Gewirtz; Spencer B Gibson; Antje Gohla; Alfred L Goldberg; Ramon Gonzalez; Cristina González-Estévez; Sharon Gorski; Roberta A Gottlieb; Dieter Häussinger; You-Wen He; Kim Heidenreich; Joseph A Hill; Maria Høyer-Hansen; Xun Hu; Wei-Pang Huang; Akiko Iwasaki; Marja Jäättelä; William T Jackson; Xuejun Jiang; Shengkan Jin; Terje Johansen; Jae U Jung; Motoni Kadowaki; Chanhee Kang; Ameeta Kelekar; David H Kessel; Jan A K W Kiel; Hong Pyo Kim; Adi Kimchi; Timothy J Kinsella; Kirill Kiselyov; Katsuhiko Kitamoto; Erwin Knecht; Masaaki Komatsu; Eiki Kominami; Seiji Kondo; Attila L Kovács; Guido Kroemer; Chia-Yi Kuan; Rakesh Kumar; Mondira Kundu; Jacques Landry; Marianne Laporte; Weidong Le; Huan-Yao Lei; Michael J Lenardo; Beth Levine; Andrew Lieberman; Kah-Leong Lim; Fu-Cheng Lin; Willisa Liou; Leroy F Liu; Gabriel Lopez-Berestein; Carlos López-Otín; Bo Lu; Kay F Macleod; Walter Malorni; Wim Martinet; Ken Matsuoka; Josef Mautner; Alfred J Meijer; Alicia Meléndez; Paul Michels; Giovanni Miotto; Wilhelm P Mistiaen; Noboru Mizushima; Baharia Mograbi; Iryna Monastyrska; Michael N Moore; Paula I Moreira; Yuji Moriyasu; Tomasz Motyl; Christian Münz; Leon O Murphy; Naweed I Naqvi; Thomas P Neufeld; Ichizo Nishino; Ralph A Nixon; Takeshi Noda; Bernd Nürnberg; Michinaga Ogawa; Nancy L Oleinick; Laura J Olsen; Bulent Ozpolat; Shoshana Paglin; Glen E Palmer; Issidora Papassideri; Miles Parkes; David H Perlmutter; George Perry; Mauro Piacentini; Ronit Pinkas-Kramarski; Mark Prescott; Tassula Proikas-Cezanne; Nina Raben; Abdelhaq Rami; Fulvio Reggiori; Bärbel Rohrer; David C Rubinsztein; Kevin M Ryan; Junichi Sadoshima; Hiroshi Sakagami; Yasuyoshi Sakai; Marco Sandri; Chihiro Sasakawa; Miklós Sass; Claudio Schneider; Per O Seglen; Oleksandr Seleverstov; Jeffrey Settleman; John J Shacka; Irving M Shapiro; Andrei Sibirny; Elaine C M Silva-Zacarin; Hans-Uwe Simon; Cristiano Simone; Anne Simonsen; Mark A Smith; Katharina Spanel-Borowski; Vickram Srinivas; Meredith Steeves; Harald Stenmark; Per E Stromhaug; Carlos S Subauste; Seiichiro Sugimoto; David Sulzer; Toshihiko Suzuki; Michele S Swanson; Ira Tabas; Fumihiko Takeshita; Nicholas J Talbot; Zsolt Tallóczy; Keiji Tanaka; Kozo Tanaka; Isei Tanida; Graham S Taylor; J Paul Taylor; Alexei Terman; Gianluca Tettamanti; Craig B Thompson; Michael Thumm; Aviva M Tolkovsky; Sharon A Tooze; Ray Truant; Lesya V Tumanovska; Yasuo Uchiyama; Takashi Ueno; Néstor L Uzcátegui; Ida van der Klei; Eva C Vaquero; Tibor Vellai; Michael W Vogel; Hong-Gang Wang; Paul Webster; John W Wiley; Zhijun Xi; Gutian Xiao; Joachim Yahalom; Jin-Ming Yang; George Yap; Xiao-Ming Yin; Tamotsu Yoshimori; Li Yu; Zhenyu Yue; Michisuke Yuzaki; Olga Zabirnyk; Xiaoxiang Zheng; Xiongwei Zhu; Russell L Deter
Journal:  Autophagy       Date:  2007-11-21       Impact factor: 16.016

10.  Lithium induces autophagy by inhibiting inositol monophosphatase.

Authors:  Sovan Sarkar; R Andres Floto; Zdenek Berger; Sara Imarisio; Axelle Cordenier; Matthieu Pasco; Lynnette J Cook; David C Rubinsztein
Journal:  J Cell Biol       Date:  2005-09-26       Impact factor: 10.539

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  112 in total

Review 1.  Canonical and non-canonical autophagy: variations on a common theme of self-eating?

Authors:  Patrice Codogno; Maryam Mehrpour; Tassula Proikas-Cezanne
Journal:  Nat Rev Mol Cell Biol       Date:  2011-12-14       Impact factor: 94.444

Review 2.  Metabolic Dependencies in RAS-Driven Cancers.

Authors:  Alec C Kimmelman
Journal:  Clin Cancer Res       Date:  2015-04-15       Impact factor: 12.531

Review 3.  The Autophagy Lysosomal Pathway and Neurodegeneration.

Authors:  Steven Finkbeiner
Journal:  Cold Spring Harb Perspect Biol       Date:  2020-03-02       Impact factor: 10.005

Review 4.  Target acquired: Selective autophagy in cardiometabolic disease.

Authors:  Trent D Evans; Ismail Sergin; Xiangyu Zhang; Babak Razani
Journal:  Sci Signal       Date:  2017-02-28       Impact factor: 8.192

5.  Ksp1 kinase regulates autophagy via the target of rapamycin complex 1 (TORC1) pathway.

Authors:  Midori Umekawa; Daniel J Klionsky
Journal:  J Biol Chem       Date:  2012-03-23       Impact factor: 5.157

Review 6.  Molecular mechanisms of autophagy in the cardiovascular system.

Authors:  Damián Gatica; Mario Chiong; Sergio Lavandero; Daniel J Klionsky
Journal:  Circ Res       Date:  2015-01-30       Impact factor: 17.367

7.  Features of autophagic cell death in Plasmodium liver-stage parasites.

Authors:  Nina Eickel; Gesine Kaiser; Monica Prado; Paul-Christian Burda; Matthias Roelli; Rebecca R Stanway; Volker T Heussler
Journal:  Autophagy       Date:  2013-02-06       Impact factor: 16.016

8.  Critical Role of Beclin1 in HIV Tat and Morphine-Induced Inflammation and Calcium Release in Glial Cells from Autophagy Deficient Mouse.

Authors:  Jessica Lapierre; Myosotys Rodriguez; Chet Raj Ojha; Nazira El-Hage
Journal:  J Neuroimmune Pharmacol       Date:  2018-05-11       Impact factor: 4.147

9.  A critical role for TLR4 induction of autophagy in the regulation of enterocyte migration and the pathogenesis of necrotizing enterocolitis.

Authors:  Matthew D Neal; Chhinder P Sodhi; Mitchell Dyer; Brian T Craig; Misty Good; Hongpeng Jia; Ibrahim Yazji; Amin Afrazi; Ward M Richardson; Donna Beer-Stolz; Congrong Ma; Thomas Prindle; Zachary Grant; Maria F Branca; John Ozolek; David J Hackam
Journal:  J Immunol       Date:  2013-03-01       Impact factor: 5.422

Review 10.  Mitochondrial pathways in sarcopenia of aging and disuse muscle atrophy.

Authors:  Riccardo Calvani; Anna-Maria Joseph; Peter J Adhihetty; Alfredo Miccheli; Maurizio Bossola; Christiaan Leeuwenburgh; Roberto Bernabei; Emanuele Marzetti
Journal:  Biol Chem       Date:  2013-03       Impact factor: 3.915

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