Literature DB >> 17218463

Force-induced DNA slippage.

Ferdinand Kühner1, Julia Morfill, Richard A Neher, Kerstin Blank, Hermann E Gaub.   

Abstract

DNA containing repetitive sequences displays richer dynamics than heterogeneous sequences. In the genome the number of repeat units of repetitive sequences, known as microsatellites, may vary during replication by DNA slippage and their expansion gives rise to serious disorders. We studied the mechanical properties of repetitive DNA using dynamic force spectroscopy and found striking differences compared with ordinary heterogeneous sequences. Repetitive sequences dissociate at lower forces and elongate above a certain threshold force. This yield force was found to be rate dependent. Following the rapid stretching of the DNA duplex, the applied force relaxes by stepwise elongation of this duplex. Conversely, contraction of the DNA duplex can be observed at low forces. The stepwise elongation and shortening is initiated by single slippage events, and single-molecule experiments might help to explain the molecular mechanisms of microsatellites formation. In addition to the biological importance, the remarkable properties of repetitive DNA can be useful for different nanomechanical applications.

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Year:  2007        PMID: 17218463      PMCID: PMC1864838          DOI: 10.1529/biophysj.106.095836

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

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Journal:  Science       Date:  2003-07-18       Impact factor: 47.728

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Authors:  Kerstin Blank; Julia Morfill; Hermann E Gaub
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6.  Slippage synthesis of simple sequence DNA.

Authors:  C Schlötterer; D Tautz
Journal:  Nucleic Acids Res       Date:  1992-01-25       Impact factor: 16.971

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

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Review 8.  Evolutionary dynamics of microsatellite DNA.

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10.  Stepwise unfolding of titin under force-clamp atomic force microscopy.

Authors:  A F Oberhauser; P K Hansma; M Carrion-Vazquez; J M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-09       Impact factor: 11.205

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  12 in total

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Journal:  Nat Protoc       Date:  2017-08-17       Impact factor: 13.491

6.  Probing of miniPEGγ-PNA-DNA Hybrid Duplex Stability with AFM Force Spectroscopy.

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7.  Modelling and inference reveal nonlinear length-dependent suppression of somatic instability for small disease associated alleles in myotonic dystrophy type 1 and Huntington disease.

Authors:  Catherine F Higham; Darren G Monckton
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8.  A Simple and Practical Spreadsheet-Based Method to Extract Single-Molecule Dissociation Kinetics from Variable Loading-Rate Force Spectroscopy Data.

Authors:  Michael J Serpe; Farrell R Kersey; Jason R Whitehead; Scott M Wilson; Robert L Clark; Stephen L Craig
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2008-12-11       Impact factor: 4.126

Review 9.  Atomic force microscopy with sub-picoNewton force stability for biological applications.

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Review 10.  Evolutionary history of cotranscriptional editing in the paramyxoviral phosphoprotein gene.

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Journal:  Virus Evol       Date:  2021-03-27
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