Literature DB >> 17218458

Stick-and-diffuse and caged diffusion: a comparison of two models of synaptic vesicle dynamics.

Chuck Yeung1, Matthew Shtrahman, Xiao-lun Wu.   

Abstract

Two models were recently proposed to enable us to understand the dynamics of synaptic vesicles in hippocampal neurons. In the caged diffusion model, the vesicles diffuse in small circular cages located randomly in the bouton, while in the stick-and-diffuse model the vesicles bind and release from a cellular cytomatrix. In this article, we obtain analytic expressions for the fluorescence correlation spectroscopy (FCS) autocorrelation function for the two models and test their predictions against our earlier FCS measurements of the vesicle dynamics. We find that the stick-and-diffuse model agrees much better with the experiment. We find also that, due to the slow dynamics of the vesicles, the finite experimental integration time has an important effect on the FCS autocorrelation function and demonstrate its effect for the different models. The two models of the dynamics are also relevant to other cellular environments where mobile species undergo slow diffusionlike motion in restricted spaces or bind and release from a stationary substrate.

Mesh:

Year:  2007        PMID: 17218458      PMCID: PMC1864819          DOI: 10.1529/biophysj.106.081794

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  18 in total

1.  Lateral diffusion of membrane proteins in the presence of static and dynamic corrals: suggestions for appropriate observables.

Authors:  F L Brown; D M Leitner; J A McCammon; K R Wilson
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  Identification of a novel process limiting the rate of synaptic vesicle cycling at hippocampal synapses.

Authors:  C F Stevens; J F Wesseling
Journal:  Neuron       Date:  1999-12       Impact factor: 17.173

Review 3.  Solute and macromolecule diffusion in cellular aqueous compartments.

Authors:  Alan S Verkman
Journal:  Trends Biochem Sci       Date:  2002-01       Impact factor: 13.807

4.  Statistical analysis of fluorescence correlation spectroscopy: the standard deviation and bias.

Authors:  Saveez Saffarian; Elliot L Elson
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

5.  High mobility of vesicles supports continuous exocytosis at a ribbon synapse.

Authors:  Matthew Holt; Anne Cooke; Andreas Neef; Leon Lagnado
Journal:  Curr Biol       Date:  2004-02-03       Impact factor: 10.834

6.  Streamlined synaptic vesicle cycle in cone photoreceptor terminals.

Authors:  Ruth Rea; Jian Li; Ajay Dharia; Edwin S Levitan; Peter Sterling; Richard H Kramer
Journal:  Neuron       Date:  2004-03-04       Impact factor: 17.173

7.  Probing vesicle dynamics in single hippocampal synapses.

Authors:  Matthew Shtrahman; Chuck Yeung; David W Nauen; Guo-qiang Bi; Xiao-Lun Wu
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

8.  Hindered diffusion of inert tracer particles in the cytoplasm of mouse 3T3 cells.

Authors:  K Luby-Phelps; P E Castle; D L Taylor; F Lanni
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

9.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

Review 10.  The synaptic vesicle cycle: a cascade of protein-protein interactions.

Authors:  T C Südhof
Journal:  Nature       Date:  1995-06-22       Impact factor: 49.962

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  16 in total

1.  High- and low-mobility stages in the synaptic vesicle cycle.

Authors:  Dirk Kamin; Marcel A Lauterbach; Volker Westphal; Jan Keller; Andreas Schönle; Stefan W Hell; Silvio O Rizzoli
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  An Intermittent Model for Intracellular Motions of Gold Nanostars by k-Space Scattering Image Correlation.

Authors:  Margaux Bouzin; Laura Sironi; Giuseppe Chirico; Laura D'Alfonso; Donato Inverso; Piersandro Pallavicini; Maddalena Collini
Journal:  Biophys J       Date:  2015-12-01       Impact factor: 4.033

3.  Direct measurement of association and dissociation rates of DNA binding in live cells by fluorescence correlation spectroscopy.

Authors:  Ariel Michelman-Ribeiro; Davide Mazza; Tilman Rosales; Timothy J Stasevich; Hacene Boukari; Vikas Rishi; Charles Vinson; Jay R Knutson; James G McNally
Journal:  Biophys J       Date:  2009-07-08       Impact factor: 4.033

4.  Spatial distribution and mobility of the Ran GTPase in live interphase cells.

Authors:  Asmahan Abu-Arish; Petr Kalab; Josh Ng-Kamstra; Karsten Weis; Cécile Fradin
Journal:  Biophys J       Date:  2009-10-21       Impact factor: 4.033

5.  CTCF and cohesin regulate chromatin loop stability with distinct dynamics.

Authors:  Anders S Hansen; Iryna Pustova; Claudia Cattoglio; Robert Tjian; Xavier Darzacq
Journal:  Elife       Date:  2017-05-03       Impact factor: 8.140

Review 6.  Synaptic vesicle recycling: steps and principles.

Authors:  Silvio O Rizzoli
Journal:  EMBO J       Date:  2014-03-03       Impact factor: 11.598

7.  Stochastic Subcellular Organization of Dense-Core Vesicles Revealed by Point Pattern Analysis.

Authors:  Benjamin J Robinson; Bogdan Stanisavljevic; Michael A Silverman; Bethe A Scalettar
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

8.  Activity-Dependence of Synaptic Vesicle Dynamics.

Authors:  Luca A Forte; Michael W Gramlich; Vitaly A Klyachko
Journal:  J Neurosci       Date:  2017-09-27       Impact factor: 6.167

9.  Synaptic vesicle pools: an update.

Authors:  Annette Denker; Silvio O Rizzoli
Journal:  Front Synaptic Neurosci       Date:  2010-10-05

10.  A benchmark for chromatin binding measurements in live cells.

Authors:  Davide Mazza; Alice Abernathy; Nicole Golob; Tatsuya Morisaki; James G McNally
Journal:  Nucleic Acids Res       Date:  2012-07-25       Impact factor: 16.971

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