Literature DB >> 17216052

Control of macromolecular structure and function using covalently attached double-stranded DNA constraints.

Scott K Silverman1.   

Abstract

The biophysical properties of DNA suggest its use for applications beyond serving as the genetic material. Several recent reports describe the use of covalently attached double-stranded DNA for controlling the structures of other macromolecules such as protein and RNA. These exploitations of DNA rigidity are conceptually distinct from many other studies in the area of "DNA nanotechnology". Double-stranded DNA constraints provide a means of introducing selective tension onto other molecules. This should facilitate fundamental investigations of macromolecular folding landscapes and tertiary interactions, as well as allow study of the mechanotransduction of biochemical signals. Use of a DNA constraint as the key element of a sensor has already been demonstrated, and such applications will be enhanced by improvements in the signal readout methods. If practical challenges such as delivery and stability can be addressed, these new efforts may also enable development of selective sensors for in vivo applications.

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Year:  2006        PMID: 17216052     DOI: 10.1039/b614116a

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  5 in total

1.  Improvement of DNA adenylation using T4 DNA ligase with a template strand and a strategically mismatched acceptor strand.

Authors:  Maha P Patel; Dana A Baum; Scott K Silverman
Journal:  Bioorg Chem       Date:  2007-11-26       Impact factor: 5.275

Review 2.  DNA as a versatile chemical component for catalysis, encoding, and stereocontrol.

Authors:  Scott K Silverman
Journal:  Angew Chem Int Ed Engl       Date:  2010-09-24       Impact factor: 15.336

3.  Selective stabilization of natively folded RNA structure by DNA constraints.

Authors:  Joseph P Gerdt; Chandrasekhar V Miduturu; Scott K Silverman
Journal:  J Am Chem Soc       Date:  2008-10-15       Impact factor: 15.419

4.  Efficient control of group I intron ribozyme catalysis by DNA constraints.

Authors:  Elena Zelin; Scott K Silverman
Journal:  Chem Commun (Camb)       Date:  2009-01-14       Impact factor: 6.222

5.  Improved deoxyribozymes for synthesis of covalently branched DNA and RNA.

Authors:  Christine S Lee; Timothy P Mui; Scott K Silverman
Journal:  Nucleic Acids Res       Date:  2010-08-25       Impact factor: 16.971

  5 in total

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