Literature DB >> 17212416

Rotational-echo double-resonance NMR distance measurements for the tubulin-bound Paclitaxel conformation.

Younkee Paik1, Chao Yang, Belhu Metaferia, Shoubin Tang, Susan Bane, Rudravajhala Ravindra, Natasha Shanker, Ana A Alcaraz, Scott A Johnson, Jacob Schaefer, Robert D O'Connor, Lynette Cegelski, James P Snyder, David G I Kingston.   

Abstract

The important anticancer drug Taxol (paclitaxel, PTX) owes its unique activity to its ability to bind to tubulin in a stoichiometric ratio and promote its assembly into microtubules. The conformation of the microtubule-bound drug has been the focus of numerous research efforts, since the inability of polymerized tubulin to form crystals precludes structure proof by X-ray crystallography. Likewise, although the alpha,beta-tubulin dimer structure has been solved by electron crystallography, the 3.7 A resolution is too low to permit direct determination of either ligand conformation or binding pose. In this article, we present experimental results from 2H{19F} REDOR NMR that provide direct confirmation that paclitaxel adopts a T-shaped conformation when it is bound to tubulin.

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Year:  2007        PMID: 17212416      PMCID: PMC2432525          DOI: 10.1021/ja0656604

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  38 in total

1.  Conformationally restricted paclitaxel analogues: macrocyclic mimics of the "hydrophobic collapse" conformation.

Authors:  T C Boge; Z J Wu; R H Himes; D G Vander Velde; G I Georg
Journal:  Bioorg Med Chem Lett       Date:  1999-10-18       Impact factor: 2.823

2.  SIMPSON: a general simulation program for solid-state NMR spectroscopy.

Authors:  M Bak; J T Rasmussen; N C Nielsen
Journal:  J Magn Reson       Date:  2000-12       Impact factor: 2.229

3.  Conformation of microtubule-bound paclitaxel determined by fluorescence spectroscopy and REDOR NMR.

Authors:  Y Li; B Poliks; L Cegelski; M Poliks; Z Gryczynski; G Piszczek; P G Jagtap; D R Studelska; D G Kingston; J Schaefer; S Bane
Journal:  Biochemistry       Date:  2000-01-18       Impact factor: 3.162

4.  T-Taxol and the electron crystallographic density in beta-tubulin.

Authors:  Scott A Johnson; Ana A Alcaraz; James P Snyder
Journal:  Org Lett       Date:  2005-12-08       Impact factor: 6.005

5.  A common pharmacophore for epothilone and taxanes: molecular basis for drug resistance conferred by tubulin mutations in human cancer cells.

Authors:  P Giannakakou; R Gussio; E Nogales; K H Downing; D Zaharevitz; B Bollbuck; G Poy; D Sackett; K C Nicolaou; T Fojo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

6.  A common pharmacophore for Taxol and the epothilones based on the biological activity of a taxane molecule lacking a C-13 side chain.

Authors:  L He; P G Jagtap; D G Kingston; H J Shen; G A Orr; S B Horwitz
Journal:  Biochemistry       Date:  2000-04-11       Impact factor: 3.162

7.  Paclitaxel-resistant cells have a mutation in the paclitaxel-binding region of beta-tubulin (Asp26Glu) and less stable microtubules.

Authors:  Malathi Hari; Frank Loganzo; Tami Annable; Xingzhi Tan; Sylvia Musto; Daniel B Morilla; James H Nettles; James P Snyder; Lee M Greenberger
Journal:  Mol Cancer Ther       Date:  2006-02       Impact factor: 6.261

Review 8.  Recent advances in the new generation taxane anticancer agents.

Authors:  R Geney; J Chen; I Ojima
Journal:  Med Chem       Date:  2005-03       Impact factor: 2.745

Review 9.  The taxanes: an update.

Authors:  J Crown; M O'Leary
Journal:  Lancet       Date:  2000-04-01       Impact factor: 79.321

10.  The T-Taxol conformation.

Authors:  Ana A Alcaraz; Anil K Mehta; Scott A Johnson; James P Snyder
Journal:  J Med Chem       Date:  2006-04-20       Impact factor: 7.446

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  28 in total

1.  Accurate determination of interstrand distances and alignment in amyloid fibrils by magic angle spinning NMR.

Authors:  Marc A Caporini; Vikram S Bajaj; Mikhail Veshtort; Anthony Fitzpatrick; Cait E MacPhee; Michele Vendruscolo; Christopher M Dobson; Robert G Griffin
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

2.  Design and synthesis of simplified taxol analogs based on the T-Taxol bioactive conformation.

Authors:  Jielu Zhao; Susan Bane; James P Snyder; Haipeng Hu; Kamalika Mukherjee; Carla Slebodnick; David G I Kingston
Journal:  Bioorg Med Chem       Date:  2011-10-13       Impact factor: 3.641

Review 3.  Drug discovery targeting cell division proteins, microtubules and FtsZ.

Authors:  Iwao Ojima; Kunal Kumar; Divya Awasthi; Jacob G Vineberg
Journal:  Bioorg Med Chem       Date:  2014-03-05       Impact factor: 3.641

4.  Evaluation of the tubulin-bound paclitaxel conformation: synthesis, biology, and SAR studies of C-4 to C-3' bridged paclitaxel analogues.

Authors:  Thota Ganesh; Chao Yang; Andrew Norris; Tom Glass; Susan Bane; Rudravajhala Ravindra; Abhijit Banerjee; Belhu Metaferia; Shala L Thomas; Paraskevi Giannakakou; Ana A Alcaraz; Ami S Lakdawala; James P Snyder; David G I Kingston
Journal:  J Med Chem       Date:  2007-01-31       Impact factor: 7.446

5.  Theory of stochastic dipolar recoupling in solid-state nuclear magnetic resonance.

Authors:  Robert Tycko
Journal:  J Phys Chem B       Date:  2007-12-18       Impact factor: 2.991

6.  Internuclear (31)P-(51)V distance measurements in polyoxoanionic solids using rotational echo adiabatic passage double resonance NMR spectroscopy.

Authors:  Wenlin Huang; Alexander J Vega; Terry Gullion; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2007-10-06       Impact factor: 15.419

Review 7.  Recent advances in the chemistry and biology of new generation taxoids.

Authors:  Iwao Ojima; Manisha Das
Journal:  J Nat Prod       Date:  2009-03-27       Impact factor: 4.050

8.  The isotridecanyl side chain of plusbacin-A3 is essential for the transglycosylase inhibition of peptidoglycan biosynthesis.

Authors:  Sung Joon Kim; Manmilan Singh; Aaron Wohlrab; Tsyr-Yan Yu; Gary J Patti; Robert D O'Connor; Michael VanNieuwenhze; Jacob Schaefer
Journal:  Biochemistry       Date:  2013-03-05       Impact factor: 3.162

9.  Differences in paclitaxel and docetaxel interactions with tubulin detected by mutagenesis of yeast tubulin.

Authors:  Robert D Winefield; Ruth A Entwistle; Travis B Foland; Gerald H Lushington; Richard H Himes
Journal:  ChemMedChem       Date:  2008-12       Impact factor: 3.466

10.  Exploration of fluorine chemistry at the multidisciplinary interface of chemistry and biology.

Authors:  Iwao Ojima
Journal:  J Org Chem       Date:  2013-05-06       Impact factor: 4.354

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