Literature DB >> 17206150

Detection of minor drug-resistant populations by parallel allele-specific sequencing.

Fangping Cai1, Haifeng Chen, Charles B Hicks, John A Bartlett, Jun Zhu, Feng Gao.   

Abstract

We developed a highly sensitive parallel allele-specific sequencing (PASS) assay to simultaneously analyze a large number of viral genomes and detect minor drug-resistant populations at approximately 0.1-0.01% levels. Using this assay on samples from individuals infected with human immunodeficiency viruses (HIV), we successfully detected and quantified minor populations of drug-resistant viruses and performed linkage analysis of multiple-drug resistance mutations. This assay may serve as a useful tool to study drug resistance in HIV and other infectious agents.

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Year:  2007        PMID： 17206150     DOI： 10.1038/nmeth995

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  34 in total

1.  Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID.

Authors:  Cassandra B Jabara; Corbin D Jones; Jeffrey Roach; Jeffrey A Anderson; Ronald Swanstrom
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-30       Impact factor: 11.205

2.  Short communication: antiretroviral therapy resistance mutations present in the HIV type 1 subtype C pol and env regions from therapy-naive patients in Zambia.

Authors:  Sandra Gonzalez; Clement Gondwe; Damien C Tully; Veenu Minhas; Danielle Shea; Chipepo Kankasa; Tendai M'soka; Charles Wood
Journal:  AIDS Res Hum Retroviruses       Date:  2010-07       Impact factor: 2.205

3.  Primary infection by a human immunodeficiency virus with atypical coreceptor tropism.

Authors:  Chunlai Jiang; Nicholas F Parrish; Craig B Wilen; Hui Li; Yue Chen; Jeffrey W Pavlicek; Anna Berg; Xiaozhi Lu; Hongshuo Song; John C Tilton; Jennifer M Pfaff; Elizabeth A Henning; Julie M Decker; M Anthony Moody; Mark S Drinker; Robert Schutte; Stephanie Freel; Georgia D Tomaras; Rebecca Nedellec; Donald E Mosier; Barton F Haynes; George M Shaw; Beatrice H Hahn; Robert W Doms; Feng Gao
Journal:  J Virol       Date:  2011-08-10       Impact factor: 5.103

4.  Evolution of drug-resistant viral populations during interruption of antiretroviral therapy.

Authors:  Dongning Wang; Charles B Hicks; Neela D Goswami; Emi Tafoya; Ruy M Ribeiro; Fangping Cai; Alan S Perelson; Feng Gao
Journal:  J Virol       Date:  2011-04-13       Impact factor: 5.103

5.  Simultaneous detection of major drug resistance mutations in the protease and reverse transcriptase genes for HIV-1 subtype C by use of a multiplex allele-specific assay.

Authors:  Guoqing Zhang; Fangping Cai; Zhiyong Zhou; Joshua DeVos; Nick Wagar; Karidia Diallo; Isaac Zulu; Nellie Wadonda-Kabondo; Jeffrey S A Stringer; Paul J Weidle; Clement B Ndongmo; Izukanji Sikazwe; Abdoulaye Sarr; Matthew Kagoli; John Nkengasong; Feng Gao; Chunfu Yang
Journal:  J Clin Microbiol       Date:  2013-08-28       Impact factor: 5.948

6.  Cooperation of B cell lineages in induction of HIV-1-broadly neutralizing antibodies.

Authors:  Feng Gao; Mattia Bonsignori; Hua-Xin Liao; Amit Kumar; Shi-Mao Xia; Xiaozhi Lu; Fangping Cai; Kwan-Ki Hwang; Hongshuo Song; Tongqing Zhou; Rebecca M Lynch; S Munir Alam; M Anthony Moody; Guido Ferrari; Mark Berrong; Garnett Kelsoe; George M Shaw; Beatrice H Hahn; David C Montefiori; Gift Kamanga; Myron S Cohen; Peter Hraber; Peter D Kwong; Bette T Korber; John R Mascola; Thomas B Kepler; Barton F Haynes
Journal:  Cell       Date:  2014-07-24       Impact factor: 41.582

7.  Rapid Detection of Common HIV-1 Drug Resistance Mutations by Use of High-Resolution Melting Analysis and Unlabeled Probes.

Authors:  David Sacks; Johanna Ledwaba; Lynn Morris; Gillian M Hunt
Journal:  J Clin Microbiol       Date:  2016-12-28       Impact factor: 5.948

8.  Analysis of low-frequency mutations associated with drug resistance to raltegravir before antiretroviral treatment.

Authors:  Jia Liu; Michael D Miller; Robert M Danovich; Nathan Vandergrift; Fangping Cai; Charles B Hicks; Daria J Hazuda; Feng Gao
Journal:  Antimicrob Agents Chemother       Date:  2010-12-20       Impact factor: 5.191

9.  Low-abundance drug-resistant HIV-1 variants: finding significance in an era of abundant diagnostic and therapeutic options.

Authors:  Robert W Shafer
Journal:  J Infect Dis       Date:  2009-03-01       Impact factor: 5.226

10.  Analysis of nevirapine resistance mutations in cloned HIV type 1 variants from HIV-infected Ugandan infants using a single-step amplification-sequencing method (AmpliSeq).

Authors:  William Ian Towler; Jessica D Church; James R Eshleman; Mary Glenn Fowler; Laura A Guay; J Brooks Jackson; Susan H Eshleman
Journal:  AIDS Res Hum Retroviruses       Date:  2008-09       Impact factor: 2.205
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