Literature DB >> 17202861

DNA barcoding Korean birds.

Hye Sook Yoo1, Jae-Yong Eah, Jong Soo Kim, Young-Jun Kim, Mi-Sook Min, Woon Kee Paek, Hang Lee, Chang-Bae Kim.   

Abstract

DNA barcoding, an inventory of DNA sequences from a standardized genomic region, provides a bio-barcode for identifying and discovering species. Several recent studies suggest that the sequence diversity in a 648 bp region of the mitochondrial gene for cytochrome c oxi- dase I (COI) might serve as a DNA barcode for identify- ing animal species such as North American birds, in- sects and fishes. The present study tested the effective- ness of a COI barcode in discriminating Korean bird species. We determined the 5' terminus of the COI bar- code for 92 species of Korean birds and found that spe- cies identification was unambiguous; the genetic differ- ences between closely related species were, on average, 25 times higher than the differences within species. We identified only one misidentified species out of 239 specimens in a genetic resource bank, so confirming the accuracy of species identification in the banking system. We also identified two potential composite species, calling for further investigation using more samples. The finding of large COI sequence differences between species confirms the effectiveness of COI barcodes for identifying Korean bird species. To bring greater reliability to the identification of species, increased in- tra- and interspecies sampling, as well as supplementa- tion of the mitochondrial barcodes with nuclear ones, is needed.

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Year:  2006        PMID: 17202861

Source DB:  PubMed          Journal:  Mol Cells        ISSN: 1016-8478            Impact factor:   5.034


  28 in total

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Authors:  Sungmin Kim; Kyo-Hong Song; Han-Il Ree; Won Kim
Journal:  Mol Cells       Date:  2011-12-01       Impact factor: 5.034

2.  An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database).

Authors:  Shao-Ke Lou; Ka-Lok Wong; Ming Li; Paul Pui-Hay But; Stephen Kwok-Wing Tsui; Pang-Chui Shaw
Journal:  BMC Genomics       Date:  2010-06-24       Impact factor: 3.969

3.  Forensic species identification of large macaws using DNA barcodes and microsatellite profiles.

Authors:  Hideaki Abe; Azusa Hayano; Miho Inoue-Murayama
Journal:  Mol Biol Rep       Date:  2011-05-28       Impact factor: 2.316

4.  Filling the gap - COI barcode resolution in eastern Palearctic birds.

Authors:  Kevin Cr Kerr; Sharon M Birks; Mikhail V Kalyakin; Yaroslav A Red'kin; Eugeny A Koblik; Paul Dn Hebert
Journal:  Front Zool       Date:  2009-12-09       Impact factor: 3.172

5.  DNA Barcodes of Arabian Partridge and Philby's Rock Partridge: Implications for Phylogeny and Species Identification.

Authors:  Haseeb Ahmad Khan; Ibrahim Abdulwahid Arif; Mohammad Shobrak
Journal:  Evol Bioinform Online       Date:  2010-12-05       Impact factor: 1.625

6.  An overview to the investigative approach to species testing in wildlife forensic science.

Authors:  Adrian Linacre; Shanan S Tobe
Journal:  Investig Genet       Date:  2011-01-13

7.  DNA barcoding the Dioscorea in China, a vital group in the evolution of monocotyledon: use of matK gene for species discrimination.

Authors:  Xiao-Qin Sun; Ying-Jie Zhu; Jian-Lin Guo; Bin Peng; Ming-Ming Bai; Yue-Yu Hang
Journal:  PLoS One       Date:  2012-02-20       Impact factor: 3.240

8.  Identifying insects with incomplete DNA barcode libraries, African fruit flies (Diptera: Tephritidae) as a test case.

Authors:  Massimiliano Virgilio; Kurt Jordaens; Floris C Breman; Thierry Backeljau; Marc De Meyer
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

9.  BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources.

Authors:  Jeongheui Lim; Sang-Yoon Kim; Sungmin Kim; Hae-Seok Eo; Chang-Bae Kim; Woon Kee Paek; Won Kim; Jong Bhak
Journal:  BMC Genomics       Date:  2009-12-03       Impact factor: 3.969

10.  Frequency matrix approach demonstrates high sequence quality in avian BARCODEs and highlights cryptic pseudogenes.

Authors:  Mark Y Stoeckle; Kevin C R Kerr
Journal:  PLoS One       Date:  2012-08-27       Impact factor: 3.240

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