Literature DB >> 17188892

A thermally induced phase transition in a viral capsid transforms the hexamers, leaving the pentamers unchanged.

James F Conway1, Naiqian Cheng, Philip D Ross, Roger W Hendrix, Robert L Duda, Alasdair C Steven.   

Abstract

Scanning calorimetry combined with cryo-electron microscopy affords a powerful approach to investigating hierarchical interactions in multi-protein complexes. Calorimetry can detect the temperatures at which certain interactions are disrupted and cryo-EM can reveal the accompanying structural changes. The procapsid of bacteriophage HK97 (Prohead I) is a 450A-diameter shell composed of 60 hexamers and 12 pentamers of gp5, organized with icosahedral symmetry. Gp5 consists of the N-terminal Delta-domain (11kDa) and gp5* (31 kDa): gp5* forms the contiguous shell from which clusters of Delta-domains extend inwards. At neutral pH, Prohead I exhibits an endothermic transition at 53 degrees C with an enthalpy change of 14 kcal/mole (of gp5 monomer). We show that this transition is reversible. To capture its structural expression, we incubated Prohead I at 60 degrees C followed by rapid freezing and, by cryo-EM, observed a capsid species 10% larger than Prohead I. At 11A resolution, visible changes are confined to the gp5 hexamers. Their Delta-domain clusters have disappeared and are presumably disordered, either by unfolding or dispersal. The gp5* hexamer rings are thinned and flattened as they assume the conformation observed in Expansion Intermediate I, a transition state of the normal, proteolysis-induced, maturation pathway. We infer that, at ambient temperatures, the hexamer Delta-domains restrain their gp5* rings from switching to a lower free energy, EI-I-like, state; above 53 degrees, this restraint is overcome. Pentamers, on the other hand, are more stably anchored and resist this thermal perturbation.

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Year:  2006        PMID: 17188892      PMCID: PMC1978070          DOI: 10.1016/j.jsb.2006.11.006

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  36 in total

1.  Physical principles in the construction of regular viruses.

Authors:  D L CASPAR; A KLUG
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1962

2.  Cryoelectron microscopy of liposomes.

Authors:  Peter M Frederik; D H W Hubert
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

3.  Control of virus assembly: HK97 "Whiffleball" mutant capsids without pentons.

Authors:  Yiyong Li; James F Conway; Naiqian Cheng; Alasdair C Steven; Roger W Hendrix; Robert L Duda
Journal:  J Mol Biol       Date:  2005-04-22       Impact factor: 5.469

Review 4.  Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity.

Authors:  Alasdair C Steven; J Bernard Heymann; Naiqian Cheng; Benes L Trus; James F Conway
Journal:  Curr Opin Struct Biol       Date:  2005-04       Impact factor: 6.809

5.  Time-resolved molecular dynamics of bacteriophage HK97 capsid maturation interpreted by electron cryo-microscopy and X-ray crystallography.

Authors:  William R Wikoff; James F Conway; Jinghua Tang; Kelly K Lee; Lu Gan; Naiqian Cheng; Robert L Duda; Roger W Hendrix; Alasdair C Steven; John E Johnson
Journal:  J Struct Biol       Date:  2005-12-22       Impact factor: 2.867

6.  Shared architecture of bacteriophage SPO1 and herpesvirus capsids.

Authors:  Robert L Duda; Roger W Hendrix; Wai Mun Huang; James F Conway
Journal:  Curr Biol       Date:  2006-01-10       Impact factor: 10.834

7.  A model-based parallel origin and orientation refinement algorithm for cryoTEM and its application to the study of virus structures.

Authors:  Yongchang Ji; Dan C Marinescu; Wei Zhang; Xing Zhang; Xiaodong Yan; Timothy S Baker
Journal:  J Struct Biol       Date:  2005-12-05       Impact factor: 2.867

8.  The atomic structure of the bluetongue virus core.

Authors:  J M Grimes; J N Burroughs; P Gouet; J M Diprose; R Malby; S Ziéntara; P P Mertens; D I Stuart
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

9.  Protein chainmail: catenated protein in viral capsids.

Authors:  R L Duda
Journal:  Cell       Date:  1998-07-10       Impact factor: 41.582

10.  Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization.

Authors:  Philip D Ross; Naiqian Cheng; James F Conway; Brian A Firek; Roger W Hendrix; Robert L Duda; Alasdair C Steven
Journal:  EMBO J       Date:  2005-03-17       Impact factor: 11.598

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  26 in total

1.  The Prohead-I structure of bacteriophage HK97: implications for scaffold-mediated control of particle assembly and maturation.

Authors:  Rick K Huang; Reza Khayat; Kelly K Lee; Ilya Gertsman; Robert L Duda; Roger W Hendrix; John E Johnson
Journal:  J Mol Biol       Date:  2011-01-27       Impact factor: 5.469

Review 2.  Virus maturation.

Authors:  David Veesler; John E Johnson
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

3.  Geometric considerations in virus capsid size specificity, auxiliary requirements, and buckling.

Authors:  Ranjan V Mannige; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-13       Impact factor: 11.205

4.  In vitro assembly of the T=13 procapsid of bacteriophage T5 with its scaffolding domain.

Authors:  Alexis Huet; James F Conway; Lucienne Letellier; Pascale Boulanger
Journal:  J Virol       Date:  2010-06-23       Impact factor: 5.103

5.  Transient contacts on the exterior of the HK97 procapsid that are essential for capsid assembly.

Authors:  Dan-ju Tso; Roger W Hendrix; Robert L Duda
Journal:  J Mol Biol       Date:  2014-03-20       Impact factor: 5.469

6.  Unfolding thermodynamics of the Delta-domain in the prohead I subunit of phage HK97: determination by factor analysis of Raman spectra.

Authors:  Daniel Nemecek; Stacy A Overman; Roger W Hendrix; George J Thomas
Journal:  J Mol Biol       Date:  2008-11-01       Impact factor: 5.469

7.  Periodic table of virus capsids: implications for natural selection and design.

Authors:  Ranjan V Mannige; Charles L Brooks
Journal:  PLoS One       Date:  2010-03-04       Impact factor: 3.240

8.  The thermodynamics of virus capsid assembly.

Authors:  Sarah Katen; Adam Zlotnick
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

9.  Architecture of a dsDNA viral capsid in complex with its maturation protease.

Authors:  David Veesler; Reza Khayat; Srinath Krishnamurthy; Joost Snijder; Rick K Huang; Albert J R Heck; Ganesh S Anand; John E Johnson
Journal:  Structure       Date:  2013-12-19       Impact factor: 5.006

10.  Functional domains of the HK97 capsid maturation protease and the mechanisms of protein encapsidation.

Authors:  Robert L Duda; Bonnie Oh; Roger W Hendrix
Journal:  J Mol Biol       Date:  2013-05-17       Impact factor: 5.469

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