Literature DB >> 17185754

Pyrosequencing applications.

Sharon Marsh1.   

Abstract

Genetics research has benefited tremendously from the release of the human genome sequence. Subsequent technology has been developed and adapted to accommodate the need for faster, easier throughput of genetic assays. Pyrosequencing is a unique system that allows the analysis of genetic variations including single-nucleotide polymorphisms, indels and short repeats, as well as assessing RNA allelic imbalance, DNA methylation status, and gene copy number. Advances in methodology, including multiplex and universal primer applications, have reduced assay cost and improved throughput. This chapter briefly reviews some of the many applications for Pyrosequencing technology.

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Year:  2007        PMID: 17185754     DOI: 10.1385/1-59745-377-3:15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  24 in total

1.  Detection of KRAS and BRAF mutations in colorectal carcinoma roles for high-sensitivity locked nucleic acid-PCR sequencing and broad-spectrum mass spectrometry genotyping.

Authors:  Maria Arcila; Christopher Lau; Khedoudja Nafa; Marc Ladanyi
Journal:  J Mol Diagn       Date:  2010-12-23       Impact factor: 5.568

2.  RUNX3 site-specific hypermethylation predicts papillary thyroid cancer recurrence.

Authors:  Dan Wang; Wei Cui; Xiaoyan Wu; Yiping Qu; Na Wang; Bingyin Shi; Peng Hou
Journal:  Am J Cancer Res       Date:  2014-11-19       Impact factor: 6.166

Review 3.  Molecular testing in melanoma.

Authors:  Melissa Ann Wilson; Katherine L Nathanson
Journal:  Cancer J       Date:  2012 Mar-Apr       Impact factor: 3.360

4.  Statistical Analyses of Next Generation Sequence Data: A Partial Overview.

Authors:  Susmita Datta; Somnath Datta; Seongho Kim; Sutirtha Chakraborty; Ryan S Gill
Journal:  J Proteomics Bioinform       Date:  2010-06-01

5.  Lyssavirus detection and typing using pyrosequencing.

Authors:  Paola De Benedictis; Cristian De Battisti; Laurent Dacheux; Sabrina Marciano; Silvia Ormelli; Angela Salomoni; Silvia Tiozzo Caenazzo; Anthony Lepelletier; Hervé Bourhy; Ilaria Capua; Giovanni Cattoli
Journal:  J Clin Microbiol       Date:  2011-03-09       Impact factor: 5.948

Review 6.  Using genetics and genomics strategies to personalize therapy for cancer: focus on melanoma.

Authors:  Katherine L Nathanson
Journal:  Biochem Pharmacol       Date:  2010-04-20       Impact factor: 5.858

7.  Coamplification at lower denaturation temperature-PCR increases mutation-detection selectivity of TaqMan-based real-time PCR.

Authors:  Jin Li; Lilin Wang; Pasi A Jänne; G Mike Makrigiorgos
Journal:  Clin Chem       Date:  2009-02-20       Impact factor: 8.327

Review 8.  Metagenomic pyrosequencing and microbial identification.

Authors:  Joseph F Petrosino; Sarah Highlander; Ruth Ann Luna; Richard A Gibbs; James Versalovic
Journal:  Clin Chem       Date:  2009-03-05       Impact factor: 8.327

9.  DNA pyrosequencing-based bacterial pathogen identification in a pediatric hospital setting.

Authors:  Ruth Ann Luna; Lea R Fasciano; Shaunte C Jones; Bobby L Boyanton; Trang T Ton; James Versalovic
Journal:  J Clin Microbiol       Date:  2007-07-25       Impact factor: 5.948

Review 10.  Next-generation sequencing of vertebrate experimental organisms.

Authors:  Daniel J Turner; Thomas M Keane; Ian Sudbery; David J Adams
Journal:  Mamm Genome       Date:  2009-05-19       Impact factor: 2.957

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