Literature DB >> 17182758

Rapid and highly sensitive pathotyping of avian influenza A H5N1 virus by using real-time reverse transcription-PCR.

Bernd Hoffmann1, Timm Harder, Elke Starick, Klaus Depner, Ortrud Werner, Martin Beer.   

Abstract

Rapid typing of the pathogenicity of avian influenza A viruses (AIV) of subtypes H5 and H7 is crucial to initiate adequate protective measures preventing the spread of highly pathogenic AIV (HPAIV). Here, a new real-time reverse transcription-PCR assay which enables sensitive and specific detection and cleavage site analysis of HPAIV H5N1 of the Qinghai lineage is described.

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Year:  2006        PMID： 17182758      PMCID： PMC1829000          DOI： 10.1128/JCM.01681-06

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  8 in total

1.  Structural features of the avian influenza virus hemagglutinin that influence virulence.

Authors:  M L Perdue; D L Suarez
Journal:  Vet Microbiol       Date:  2000-05-22       Impact factor: 3.293

2.  Single step multiplex real-time RT-PCR for H5N1 influenza A virus detection.

Authors:  Sunchai Payungporn; Salin Chutinimitkul; Arunee Chaisingh; Sudarat Damrongwantanapokin; Chantanee Buranathai; Alongkorn Amonsin; Apiradee Theamboonlers; Yong Poovorawan
Journal:  J Virol Methods       Date:  2005-09-23       Impact factor: 2.014

Review 3.  Role of hemagglutinin cleavage for the pathogenicity of influenza virus.

Authors:  D A Steinhauer
Journal:  Virology       Date:  1999-05-25       Impact factor: 3.616

4.  Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes.

Authors:  Erica Spackman; Dennis A Senne; T J Myers; Leslie L Bulaga; Lindsey P Garber; Michael L Perdue; Kenton Lohman; Luke T Daum; David L Suarez
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

5.  Application of real-time RT-PCR for the quantitation and competitive replication study of H5 and H7 subtype avian influenza virus.

Authors:  Chang-Won Lee; David L Suarez
Journal:  J Virol Methods       Date:  2004-08       Impact factor: 2.014

6.  Deduced amino acid sequences at the haemagglutinin cleavage site of avian influenza A viruses of H5 and H7 subtypes.

Authors:  G W Wood; J W McCauley; J B Bashiruddin; D J Alexander
Journal:  Arch Virol       Date:  1993       Impact factor: 2.574

7.  Discrimination between highly pathogenic and low pathogenic H5 avian influenza A viruses.

Authors:  Sunchai Payungporn; Salin Chutinimitkul; Arunee Chaisingh; Sudarat Damrongwantanapokin; Bandit Nuansrichay; Wasana Pinyochon; Alongkorn Amonsin; Ruben O Donis; Apiradee Theamboonlers; Yong Poovorawan
Journal:  Emerg Infect Dis       Date:  2006-04       Impact factor: 6.883

8.  Influenza A H5N1 detection.

Authors:  Enders K O Ng; Peter K C Cheng; Antia Y Y Ng; T L Hoang; Wilina W L Lim
Journal:  Emerg Infect Dis       Date:  2005-08       Impact factor: 6.883
  8 in total
  31 in total

1.  Improved safety for molecular diagnosis of classical rabies viruses by use of a TaqMan real-time reverse transcription-PCR "double check" strategy.

Authors:  B Hoffmann; C M Freuling; P R Wakeley; T B Rasmussen; S Leech; A R Fooks; M Beer; T Müller
Journal:  J Clin Microbiol       Date:  2010-08-25       Impact factor: 5.948

2.  Broad detection of diverse H5 and H7 hemagglutinin genes of avian influenza viruses by real-time reverse transcription-PCR using primer and probe sets containing mixed bases.

Authors:  Kenji Tsukamoto; Daigo Noguchi; Koutaro Suzuki; Makiko Shishido; Takayoshi Ashizawa; Min-Chul Kim; Youn-Jeong Lee; Tatsuya Tada
Journal:  J Clin Microbiol       Date:  2010-09-22       Impact factor: 5.948

3.  Truncation and sequence shuffling of segment 6 generate replication-competent neuraminidase-negative influenza H5N1 viruses.

Authors:  Donata Kalthoff; Susanne Röhrs; Dirk Höper; Bernd Hoffmann; Jessica Bogs; Jürgen Stech; Martin Beer
Journal:  J Virol       Date:  2013-10-09       Impact factor: 5.103

4.  Subtyping of avian influenza viruses H1 to H15 on the basis of hemagglutinin genes by PCR assay and molecular determination of pathogenic potential.

Authors:  Kenji Tsukamoto; Hisayoshi Ashizawa; Koji Nakanishi; Noriyuki Kaji; Kotaro Suzuki; Masatoshi Okamatsu; Shigeo Yamaguchi; Masaji Mase
Journal:  J Clin Microbiol       Date:  2008-07-02       Impact factor: 5.948

5.  Development and validation of a one-step real-time PCR assay for simultaneous detection of subtype H5, H7, and H9 avian influenza viruses.

Authors:  Isabella Monne; Silvia Ormelli; Annalisa Salviato; Cristian De Battisti; Francesca Bettini; Angela Salomoni; Alessandra Drago; Bianca Zecchin; Ilaria Capua; Giovanni Cattoli
Journal:  J Clin Microbiol       Date:  2008-03-26       Impact factor: 5.948

6.  Universal primer set for amplification and sequencing of HA0 cleavage sites of all influenza A viruses.

Authors:  Astrid Gall; Bernd Hoffmann; Timm Harder; Christian Grund; Martin Beer
Journal:  J Clin Microbiol       Date:  2008-06-18       Impact factor: 5.948

Review 7.  Detection of respiratory viruses by molecular methods.

Authors:  James B Mahony
Journal:  Clin Microbiol Rev       Date:  2008-10       Impact factor: 26.132

8.  Multiplexed, rapid detection of H5N1 using a PCR-free nanoparticle-based genomic microarray assay.

Authors:  Jiangqin Zhao; Shixing Tang; James Storhoff; Sudhakar Marla; Y Paul Bao; Xue Wang; Eric Y Wong; Viswanath Ragupathy; Zhiping Ye; Indira K Hewlett
Journal:  BMC Biotechnol       Date:  2010-10-13       Impact factor: 2.563

9.  Chances and limitations of wild bird monitoring for the avian influenza virus H5N1--detection of pathogens highly mobile in time and space.

Authors:  Hendrik Wilking; Mario Ziller; Christoph Staubach; Anja Globig; Timm C Harder; Franz J Conraths
Journal:  PLoS One       Date:  2009-08-14       Impact factor: 3.240

10.  Migratory status is not related to the susceptibility to HPAIV H5N1 in an insectivorous passerine species.

Authors:  Donata Kalthoff; Angele Breithaupt; Barbara Helm; Jens P Teifke; Martin Beer
Journal:  PLoS One       Date:  2008-07-09       Impact factor: 3.240
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