Literature DB >> 17182744

Urban aerosols harbor diverse and dynamic bacterial populations.

Eoin L Brodie1, Todd Z DeSantis, Jordan P Moberg Parker, Ingrid X Zubietta, Yvette M Piceno, Gary L Andersen.   

Abstract

Considering the importance of its potential implications for human health, agricultural productivity, and ecosystem stability, surprisingly little is known regarding the composition or dynamics of the atmosphere's microbial inhabitants. Using a custom high-density DNA microarray, we detected and monitored bacterial populations in two U.S. cities over 17 weeks. These urban aerosols contained at least 1,800 diverse bacterial types, a richness approaching that of some soil bacterial communities. We also reveal the consistent presence of bacterial families with pathogenic members including environmental relatives of select agents of bioterrorism significance. Finally, using multivariate regression techniques, we demonstrate that temporal and meteorological influences can be stronger factors than location in shaping the biological composition of the air we breathe.

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Year:  2006        PMID: 17182744      PMCID: PMC1713168          DOI: 10.1073/pnas.0608255104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Bacteria and fungi in aerosols generated by two different types of wastewater treatment plants.

Authors:  H Bauer; M Fuerhacker; F Zibuschka; H Schmid; H Puxbaum
Journal:  Water Res       Date:  2002-09       Impact factor: 11.236

2.  Probe selection for high-density oligonucleotide arrays.

Authors:  Rui Mei; Earl Hubbell; Stefan Bekiranov; Mike Mittmann; Fred C Christians; Mei-Mei Shen; Gang Lu; Joy Fang; Wei-Min Liu; Tom Ryder; Paul Kaplan; David Kulp; Teresa A Webster
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

3.  Rapid quantification and taxonomic classification of environmental DNA from both prokaryotic and eukaryotic origins using a microarray.

Authors:  Todd Z DeSantis; Carol E Stone; Sonya R Murray; Jordan P Moberg; Gary L Andersen
Journal:  FEMS Microbiol Lett       Date:  2005-04-15       Impact factor: 2.742

4.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

5.  Bias in template-to-product ratios in multitemplate PCR.

Authors:  M F Polz; C M Cavanaugh
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

6.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  Water-to-air transfer of virus.

Authors:  E R Baylor; V Peters; M B Baylor
Journal:  Science       Date:  1977-08-19       Impact factor: 47.728

8.  Waterborne outbreak of tularemia associated with crayfish fishing.

Authors:  P Anda; J Segura del Pozo; J M Díaz García; R Escudero; F J García Peña; M C López Velasco; R E Sellek; M R Jiménez Chillarón; L P Sánchez Serrano; J F Martínez Navarro
Journal:  Emerg Infect Dis       Date:  2001       Impact factor: 6.883

9.  Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands.

Authors:  Jeroen Heyrman; Bram Vanparys; Niall A Logan; An Balcaen; Marina Rodríguez-Díaz; Andreas Felske; Paul De Vos
Journal:  Int J Syst Evol Microbiol       Date:  2004-01       Impact factor: 2.747

10.  NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

Authors:  T Z DeSantis; P Hugenholtz; K Keller; E L Brodie; N Larsen; Y M Piceno; R Phan; G L Andersen
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

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  170 in total

1.  Structure of the human gastric bacterial community in relation to Helicobacter pylori status.

Authors:  Ana Maldonado-Contreras; Kate C Goldfarb; Filipa Godoy-Vitorino; Ulas Karaoz; Mónica Contreras; Martin J Blaser; Eoin L Brodie; Maria G Dominguez-Bello
Journal:  ISME J       Date:  2010-10-07       Impact factor: 10.302

2.  Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows.

Authors:  Filipa Godoy-Vitorino; Katherine C Goldfarb; Ulas Karaoz; Sara Leal; Maria A Garcia-Amado; Philip Hugenholtz; Susannah G Tringe; Eoin L Brodie; Maria Gloria Dominguez-Bello
Journal:  ISME J       Date:  2011-09-22       Impact factor: 10.302

3.  Characterization of airborne bacteria at an underground subway station.

Authors:  Marius Dybwad; Per Einar Granum; Per Bruheim; Janet Martha Blatny
Journal:  Appl Environ Microbiol       Date:  2012-01-13       Impact factor: 4.792

4.  Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site.

Authors:  Patrick K H Lee; F Warnecke; Eoin L Brodie; Tamzen W Macbeth; Mark E Conrad; Gary L Andersen; Lisa Alvarez-Cohen
Journal:  Environ Sci Technol       Date:  2011-12-27       Impact factor: 9.028

5.  Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.

Authors:  Kristen M DeAngelis; Mary K Firestone
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

6.  Non-invasive detection of pulmonary pathogens in ventilator-circuit filters by PCR.

Authors:  Richard J Isaacs; Ken Debelak; Patrick R Norris; Judith M Jenkins; Jeffrey C Rooks; Todd R Young; Addison K May; Erik M Boczko
Journal:  Am J Transl Res       Date:  2012-01-05       Impact factor: 4.060

7.  In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes.

Authors:  Laura C Bohorquez; Luisa Delgado-Serrano; Gina López; César Osorio-Forero; Vanja Klepac-Ceraj; Roberto Kolter; Howard Junca; Sandra Baena; María Mercedes Zambrano
Journal:  Microb Ecol       Date:  2011-09-27       Impact factor: 4.552

8.  Metagenomic characterization of airborne viral DNA diversity in the near-surface atmosphere.

Authors:  Tae Woong Whon; Min-Soo Kim; Seong Woon Roh; Na-Ri Shin; Hae-Won Lee; Jin-Woo Bae
Journal:  J Virol       Date:  2012-05-23       Impact factor: 5.103

9.  Microbial and mineralogical characterizations of soils collected from the deep biosphere of the former Homestake gold mine, South Dakota.

Authors:  Gurdeep Rastogi; Shariff Osman; Ravi Kukkadapu; Mark Engelhard; Parag A Vaishampayan; Gary L Andersen; Rajesh K Sani
Journal:  Microb Ecol       Date:  2010-04-13       Impact factor: 4.552

10.  An outbreak of respiratory tularemia caused by diverse clones of Francisella tularensis.

Authors:  Anders Johansson; Adrian Lärkeryd; Micael Widerström; Sara Mörtberg; Kerstin Myrtännäs; Caroline Ohrman; Dawn Birdsell; Paul Keim; David M Wagner; Mats Forsman; Pär Larsson
Journal:  Clin Infect Dis       Date:  2014-08-05       Impact factor: 9.079

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