| Literature DB >> 17176563 |
Will Sopwith1, Andrew Birtles, Margaret Matthews, Andrew Fox, Steven Gee, Michael Painter, Martyn Regan, Qutub Syed, Eric Bolton.
Abstract
Detailed understanding of the epidemiology of Campylobacter is increasingly facilitated through use of universal and reproducible techniques for accurate strain differentiation and subtyping. Multilocus sequence typing (MLST) enables discriminatory subtyping and grouping of isolate types into genetically related clonal complexes; it also has the advantage of ease of application and repeatability. Recent studies suggest that a measure of host association may be distinguishable with this system. We describe the first continuous population-based survey to investigate the potential of MLST to resolve questions of campylobacteriosis epidemiology. We demonstrate the ability of MLST to identify variations in the epidemiology of campylobacteriosis between distinct populations and describe the distribution of key subtypes of interest.Entities:
Mesh:
Year: 2006 PMID: 17176563 PMCID: PMC3290937 DOI: 10.3201/eid1210.060048
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Location of the 4 local authorities constituting the study area in Northwest England. The populations covered (outlined areas) were Fylde and Wyre (in Lancashire) and Salford and Trafford (within the metropolitan area of Greater Manchester). Gray areas indicate approximate location of built-up areas.
Distribution of Campylobacter jejuni multilocus sequence typing clonal complexes by study area, April 2003 to March 2004*
| Clonal complex | Fylde | Wyre | Salford | Trafford | Total | % of all typed |
|---|---|---|---|---|---|---|
| ST-21 | 15 | 21 | 22 | 44 | 102 | 28.7 |
| ST-45 | 11 | 10 | 7 | 7 | 35 | 9.8 |
| UA | 6 | 6 | 6 | 16 | 34 | 9.6 |
| ST-257 | 5 | 4 | 9 | 10 | 28 | 7.9 |
| ST-443 | 1 | 5 | 6 | 9 | 21 | 5.9 |
| ST-48 | 3 | 3 | 2 | 11 | 19 | 5.3 |
| ST-206 | 6 | 2 | 3 | 7 | 18 | 5.1 |
| ST-353 | 3 | 1 | 1 | 8 | 13 | 3.7 |
| ST-22 | 2 | 0 | 2 | 3 | 7 | 2.0 |
| ST-49 | 0 | 2 | 2 | 3 | 7 | 2.0 |
| ST-42 | 1 | 0 | 2 | 3 | 6 | 1.7 |
| ST-354 | 1 | 0 | 0 | 4 | 5 | 1.4 |
| ST-61 | 2 | 1 | 1 | 1 | 5 | 1.4 |
| ST-283 | 0 | 1 | 0 | 3 | 4 | 1.1 |
| ST-52 | 1 | 0 | 2 | 1 | 4 | 1.1 |
| ST-573 | 1 | 2 | 0 | 1 | 4 | 1.1 |
| ST-658 | 1 | 0 | 2 | 1 | 4 | 1.1 |
| ST-403 | 0 | 0 | 0 | 3 | 3 | 0.8 |
| ST-508 | 1 | 0 | 0 | 2 | 3 | 0.8 |
| ST-460 | 0 | 0 | 2 | 0 | 2 | 0.6 |
| ST-177 | 1 | 0 | 0 | 0 | 1 | 0.3 |
| ST-362 | 0 | 0 | 1 | 0 | 1 | 0.3 |
|
| 5 | 11 | 4 | 10 | 30 | 8.4 |
| No typing | 22 | 24 | 39 | 52 | 137† | |
| Total | 88 | 93 | 113 | 199 | 493 |
*Including UA (new sequence types as yet unassigned to a clonal complex). Data show the number of human isolates per local authority and the percentage of all typed isolates attributed to each complex. Numbers of C. coli isolates are also shown and included in the denominator of "all typed cases." Isolates with "no typing" represent reports of campylobacteriosis to the surveillance system that do not have a corresponding typed isolate. †Not included in the "all typed cases" denominator.
Figure 2Seasonality of human cases of campylobacteriosis reported in the first 12 months of the study period in patients residing in Fylde and Wyre (rural) and Salford and Trafford (suburban). To allow comparison between the areas, the number of cases reported to the North West Health Protection Agency surveillance system during 4-week intervals were converted to incidence by using estimates of the annual population for each local authority. The periods at which the incidence differed with marginal statistical significance are indicated with an asterisk: weeks 29–32, incidence ratio (IR) 1.79, 95% confidence intervals (CI) 0.98–3.22 (p = 0.05); weeks 1–4, IR 2.20, 95% CI 0.98–4.88 (p = 0.04); weeks 5–8, IR 2.36, 95% CI 1.04–5.33 (p = 0.02).
Comparative distributions of the most common MLST clonal complexes by study area, April 2003 to March 2004*
| Clonal complex | Isolates | Incidence/100,000 | Incidence ratio | 95% confidence intervals | p value | ||
|---|---|---|---|---|---|---|---|
| Rural | Suburban | Rural | Suburban | ||||
| ST–21 | 36 | 66 | 19.91 | 15.50 | 1.28 | 0.83–1.96 | – |
|
|
|
|
|
|
|
|
|
| UA | 12 | 22 | 6.64 | 5.17 | 1.28 | 0.58–2.71 | – |
| ST–257 | 9 | 19 | 4.98 | 4.46 | 1.12 | 0.44–2.59 | – |
| ST–443 | 6 | 15 | 3.32 | 3.52 | 1.01 | 0.32–2.80 | – |
| ST–48 | 6 | 13 | 3.32 | 3.05 | 1.09 | 0.34–3.07 | – |
| ST–206 | 8 | 10 | 4.42 | 2.35 | 1.88 | 0.65–5.30 | – |
| ST–353 | 4 | 9 | 2.21 | 2.11 | 1.05 | 0.24–3.75 | – |
| ST–22 | 2 | 5 | 1.11 | 1.17 | 0.94 | 0.09–5.75 | – |
| ST–49 | 2 | 5 | 1.11 | 1.17 | 0.94 | 0.09–5.75 | – |
| C. coli |
|
|
|
|
|
|
|
| All cases† |
|
|
|
|
|
|
|
*Including UA (new sequence types as yet unassigned to a clonal complex), Campylobacter coli isolates, and all cases of campylobacteriosis reported. Annual estimated incidence was calculated for each clonal complex and incidence ratios were calculated for rural incidence/suburban incidence, including confidence intervals. Those data with a statistically significant difference between the study areas are shown in boldface type (level of significance p<0.05). MLST, multilocus sequence typing. †Refers to the entire dataset for reference, i.e., those shown in this table plus all others.
Figure 3Seasonal distribution of multilocus sequence typing clonal complex in human cases of campylobacteriosis reported in the first 12 months of the study period, by residence in A) Fylde and Wyre (rural) and B) Salford and Trafford (suburban). The number of typed isolates reported during 4-week intervals was converted to incidence by using annual population estimates. The 8 most commonly reported complexes are distinguished, with cases from all other complexes presented as "other." The incidence of "all cases reported" (typed and untyped) is presented for reference (solid line).
Comparative age distributions of the most common MLST clonal complexes by study area (first year of the study)*
| Clonal complex | Age group | Isolates | Incidence/100,000 | Incidence ratio | 95% confidence intervals | p value | ||
|---|---|---|---|---|---|---|---|---|
| Rural | Suburban | Rural | Suburban | |||||
| ST–21 | 0–14 | 2 | 14 | 6.65 | 17.68 | 0.38 | 0.04–1.64 | – |
| 15–34 | 9 | 24 | 24.27 | 21.02 | 1.15 | 0.47–2.57 | – | |
| 35–54 | 12 | 18 | 24.38 | 15.14 | 1.61 | 0.71–3.53 | – | |
| 13 | 13 | 20.17 | 11.43 | 1.76 | 0.75–4.13 | – | ||
| ST–45 | 0–14 | 3 | 1 | 9.97 | 1.26 | 7.89 | 0.63–414.40 | – |
| 15–34 | 1 | 4 | 2.70 | 3.50 | 0.77 | 0.02–7.78 | – | |
| 35–54 | 7 | 6 | 14.22 | 5.05 | 2.82 | 0.81–10.15 | – | |
|
|
|
|
|
|
|
|
| |
| ST–257 | 0–14 | 2 | 1 | 6.65 | 1.26 | 5.26 | 0.27–310.48 | – |
| 15–34 | 1 | 8 | 2.70 | 7.01 | 0.38 | 0.01–2.87 | – | |
| 35–54 | 3 | 8 | 6.09 | 6.73 | 0.91 | 0.15–3.77 | – | |
|
| 4 | 4 | 6.21 | 3.52 | 1.76 | 0.33–9.47 | – | |
| ST–443 | 0–14 | 1 | 0 | 3.32 | 0.00 | – | – | – |
| 15–34 | 3 | 5 | 8.09 | 4.38 | 1.85 | 0.29–9.50 | – | |
| 35–54 | 0 | 6 | 0.00 | 5.05 | – | – | – | |
|
| 1 | 6 | 1.55 | 5.28 | 0.29 | 0.01–2.42 | – | |
| ST–48 | 0–14 | 1 | 2 | 3.32 | 2.53 | 1.32 | 0.02–25.27 | – |
| 15–34 | 5 | 7 | 13.48 | 6.13 | 2.20 | 0.55–8.05 | – | |
| 35–54 | 0 | 4 | 0.00 | 3.36 | – | – | – | |
|
| 1 | 2 | 1.55 | 1.76 | 0.88 | 0.01–16.94 | – | |
| ST–206 | 0–14 | 0 | 0 | 0.00 | 0.00 | – | – | – |
| 15–34 | 1 | 6 | 2.70 | 5.26 | 0.51 | 0.01–4.23 | – | |
| 35–54 | 5 | 5 | 10.16 | 4.21 | 2.42 | 0.56–10.49 | – | |
|
| 2 | 1 | 3.10 | 0.88 | 3.53 | 0.18–208.11 | – | |
| All cases | 0–14 | 19 | 29 | 63.13 | 36.62 | 1.72 | 0.91–3.18 | – |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
| |
|
|
|
|
|
|
|
|
| |
*Including all cases of campylobacteriosis reported for which age was available. Annual estimated incidences in 4 age groups were calculated for each clonal complex using estimates of the age-specific annual population for each local authority. Incidence ratios were calculated for rural incidence/suburban incidence and 95% confidence intervals calculated. Those data with a statistically significant difference between the study areas are shown in boldface type (level of significance p<0.05). MLST, multilocus sequence typing.