Literature DB >> 17174464

Binding of intrinsically disordered proteins is not necessarily accompanied by a structural transition to a folded form.

Alexander B Sigalov1, Anastasia V Zhuravleva, Vladislav Yu Orekhov.   

Abstract

There are a large number of protein domains and even entire proteins, lacking ordered structure under physiological conditions. Intriguingly, a highly flexible, random coil-like conformation is the native and functional state for many proteins known to be involved in cell signaling. An example is a key component of immune signaling, the cytoplasmic region of the T cell receptor zeta subunit. This domain exhibits specific dimerization that is distinct from non-specific aggregation behavior seen in many systems. In this work, we use diffusion and chemical shift mapping NMR data to show that the protein does not undergo a transition between disordered and ordered states upon dimerization. This finding opposes the generally accepted view on the behavior of intrinsically disordered proteins, provides evidence for the existence of specific dimerization interactions for intrinsically disordered protein species and opens a new line of research in this new and quickly developing field.

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Year:  2006        PMID: 17174464      PMCID: PMC2692994          DOI: 10.1016/j.biochi.2006.11.003

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  11 in total

1.  Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques.

Authors:  D K Wilkins; S B Grimshaw; V Receveur; C M Dobson; J A Jones; L J Smith
Journal:  Biochemistry       Date:  1999-12-14       Impact factor: 3.162

2.  Phosphorylation of T cell receptor zeta is regulated by a lipid dependent folding transition.

Authors:  D Aivazian; L J Stern
Journal:  Nat Struct Biol       Date:  2000-11

Review 3.  Natively unfolded proteins: a point where biology waits for physics.

Authors:  Vladimir N Uversky
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

Review 4.  Unfolded proteins and protein folding studied by NMR.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

5.  Homooligomerization of the cytoplasmic domain of the T cell receptor zeta chain and of other proteins containing the immunoreceptor tyrosine-based activation motif.

Authors:  Alexander Sigalov; Dikran Aivazian; Lawrence Stern
Journal:  Biochemistry       Date:  2004-02-24       Impact factor: 3.162

Review 6.  Multichain immune recognition receptor signaling: different players, same game?

Authors:  Alexander B Sigalov
Journal:  Trends Immunol       Date:  2004-11       Impact factor: 16.687

Review 7.  The interplay between structure and function in intrinsically unstructured proteins.

Authors:  Peter Tompa
Journal:  FEBS Lett       Date:  2005-04-08       Impact factor: 4.124

8.  Intrinsic disorder in cell-signaling and cancer-associated proteins.

Authors:  Lilia M Iakoucheva; Celeste J Brown; J David Lawson; Zoran Obradović; A Keith Dunker
Journal:  J Mol Biol       Date:  2002-10-25       Impact factor: 5.469

Review 9.  T-cell receptor signal transmission: who gives an ITAM?

Authors:  Lisa A Pitcher; Nicolai S C van Oers
Journal:  Trends Immunol       Date:  2003-10       Impact factor: 16.687

10.  Phosphorylated T cell receptor zeta-chain and ZAP70 tandem SH2 domains form a 1:3 complex in vitro.

Authors:  W Weissenhorn; M J Eck; S C Harrison; D C Wiley
Journal:  Eur J Biochem       Date:  1996-06-01
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  55 in total

Review 1.  Evolution of immunity: no development without risk.

Authors:  Alexander B Sigalov
Journal:  Immunol Res       Date:  2012-06       Impact factor: 2.829

2.  Cells diversify transmembrane signaling through the controlled chaos of protein disorder.

Authors:  Alexander B Sigalov
Journal:  Self Nonself       Date:  2011-04-01

Review 3.  New therapeutic strategies targeting transmembrane signal transduction in the immune system.

Authors:  Alexander B Sigalov
Journal:  Cell Adh Migr       Date:  2010-04-24       Impact factor: 3.405

4.  Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

Authors:  Hongbo Xie; Slobodan Vucetic; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Vladimir N Uversky; Zoran Obradovic
Journal:  J Proteome Res       Date:  2007-03-29       Impact factor: 4.466

5.  The cytoplasmic domain of the T-cell receptor zeta subunit does not form disordered dimers.

Authors:  Amanda Nourse; Tanja Mittag
Journal:  J Mol Biol       Date:  2013-10-10       Impact factor: 5.469

6.  The SCHOOL of nature: I. Transmembrane signaling.

Authors:  Alexander B Sigalov
Journal:  Self Nonself       Date:  2010-01

7.  Unusual biophysics of immune signaling-related intrinsically disordered proteins.

Authors:  Alexander B Sigalov
Journal:  Self Nonself       Date:  2010-10

8.  The SCHOOL of nature: III. From mechanistic understanding to novel therapies.

Authors:  Alexander B Sigalov
Journal:  Self Nonself       Date:  2010-06-11

9.  Differential occurrence of protein intrinsic disorder in the cytoplasmic signaling domains of cell receptors.

Authors:  Alexander B Sigalov; Vladimir N Uversky
Journal:  Self Nonself       Date:  2011-01-01

10.  Intrinsic disorder in protein interactions: insights from a comprehensive structural analysis.

Authors:  Jessica H Fong; Benjamin A Shoemaker; Sergiy O Garbuzynskiy; Michail Y Lobanov; Oxana V Galzitskaya; Anna R Panchenko
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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