Literature DB >> 17169435

A standardized approach for accurate quantification of murein hydrolase activity in high-throughput assays.

Yves Briers1, Rob Lavigne, Guido Volckaert, Kirsten Hertveldt.   

Abstract

Current spectrophotometers measure murein hydrolase activity simultaneously under many conditions and in small intervals. A correct interpretation of these large data sets requires clear and standardized criteria. Furthermore, there is a need for a uniform unit definition to express enzymatic activity, because application of variable definitions seriously hampered comparison between different studies. The method presented here is based on maximizing R(2)-values of incremental data sets. Combined with an appropriate unit definition, it provides a statistically sound background and warrants reproducible and reliable results. Activity calculations are further simplified by an online available Excel spreadsheet. This method is especially suited for experiments where individual curves differ extensively from each other (e.g. low versus high activity conditions) and can be expanded to other similar high-throughput bioassays.

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Year:  2006        PMID: 17169435     DOI: 10.1016/j.jbbm.2006.10.009

Source DB:  PubMed          Journal:  J Biochem Biophys Methods        ISSN: 0165-022X


  32 in total

1.  Expression and functional characterization of the first bacteriophage-encoded chaperonin.

Authors:  Lidia P Kurochkina; Pavel I Semenyuk; Victor N Orlov; Johan Robben; Nina N Sykilinda; Vadim V Mesyanzhinov
Journal:  J Virol       Date:  2012-07-11       Impact factor: 5.103

2.  The lysis cassette of bacteriophage ϕKMV encodes a signal-arrest-release endolysin and a pinholin.

Authors:  Yves Briers; Liesbet M Peeters; Guido Volckaert; Rob Lavigne
Journal:  Bacteriophage       Date:  2011-01

3.  Lysin LysMK34 of Acinetobacter baumannii Bacteriophage PMK34 Has a Turgor Pressure-Dependent Intrinsic Antibacterial Activity and Reverts Colistin Resistance.

Authors:  Karim Abdelkader; Diana Gutiérrez; Dennis Grimon; Patricia Ruas-Madiedo; Cédric Lood; Rob Lavigne; Amal Safaan; Ahmed S Khairalla; Yasser Gaber; Tarek Dishisha; Yves Briers
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

4.  Influence of NaCl and pH on lysostaphin catalytic activity, cell binding, and bacteriolytic activity.

Authors:  Svetlana Konstantinova; Alexander Grishin; Alexander Lyashchuk; Irina Vasina; Anna Karyagina; Vladimir Lunin
Journal:  Appl Microbiol Biotechnol       Date:  2022-09-16       Impact factor: 5.560

Review 5.  Bacteriophage endolysins as novel antimicrobials.

Authors:  Mathias Schmelcher; David M Donovan; Martin J Loessner
Journal:  Future Microbiol       Date:  2012-10       Impact factor: 3.165

6.  DUF3380 Domain from a Salmonella Phage Endolysin Shows Potent N-Acetylmuramidase Activity.

Authors:  Lorena Rodríguez-Rubio; Hans Gerstmans; Simon Thorpe; Stéphane Mesnage; Rob Lavigne; Yves Briers
Journal:  Appl Environ Microbiol       Date:  2016-07-29       Impact factor: 4.792

7.  Novel highly thermostable endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 with amino acid sequence similarity to eukaryotic peptidoglycan recognition proteins.

Authors:  Magdalena Plotka; Anna-Karina Kaczorowska; Aleksandra Stefanska; Agnieszka Morzywolek; Olafur H Fridjonsson; Stanislaw Dunin-Horkawicz; Lukasz Kozlowski; Gudmundur O Hreggvidsson; Jakob K Kristjansson; Slawomir Dabrowski; Janusz M Bujnicki; Tadeusz Kaczorowski
Journal:  Appl Environ Microbiol       Date:  2013-11-22       Impact factor: 4.792

8.  Characterization of modular bacteriophage endolysins from Myoviridae phages OBP, 201φ2-1 and PVP-SE1.

Authors:  Maarten Walmagh; Yves Briers; Silvio Branco dos Santos; Joana Azeredo; Rob Lavigne
Journal:  PLoS One       Date:  2012-05-15       Impact factor: 3.240

9.  Structure of collagenase G reveals a chew-and-digest mechanism of bacterial collagenolysis.

Authors:  Ulrich Eckhard; Esther Schönauer; Dorota Nüss; Hans Brandstetter
Journal:  Nat Struct Mol Biol       Date:  2011-09-25       Impact factor: 15.369

10.  Genomic Analysis of a Novel Phage Infecting the Turkey Pathogen Escherichia coli APEC O78 and Its Endolysin Activity.

Authors:  Sangsang Deng; Qiang Xu; Yajuan Fu; Leiqin Liang; Yan Wu; Fang Peng; Meiying Gao
Journal:  Viruses       Date:  2021-05-31       Impact factor: 5.048

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