Literature DB >> 17158986

Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria.

S L'Haridon1, A-L Reysenbach2, B J Tindall3, P Schönheit4, A Banta2, U Johnsen4, P Schumann3, A Gambacorta5, E Stackebrandt3, C Jeanthon1.   

Abstract

Three thermophilic, anaerobic, strictly chemolithoautotrophic, sulphur- and/or thiosulphate-reducing bacteria, designated SL17(T), SL19(T) and SL22(T), were isolated from deep-sea hydrothermal samples collected at 13 degrees N (East Pacific Rise), Guaymas Basin (Gulf of California) and 23 degrees N (Mid-Atlantic Ridge), respectively. These strains differed in their morphology, temperature range and optimum for growth, energy substrates and 16S rRNA gene sequences. The G+C content of the genomic DNA was 41 mol% (SL22(T)), 42 mol% (SL17(T)) and 46 mol% (SL19(T)). Comparative analysis of phenotypic and phylogenetic traits indicated that strains SL17(T) and SL22(T) represented two novel species of the genus Desulfurobacterium and that strain SL19(T) should be considered as a novel species of the genus Thermovibrio. The names Desulfurobacterium pacificum sp. nov. (type strain SL17(T)=DSM 15522(T)=JCM 12127(T)), Desulfurobacterium atlanticum sp. nov. (type strain SL22(T)=DSM 15668(T)=JCM 12129(T)) and Thermovibrio guaymasensis sp. nov. (type strain SL19(T)=DSM 15521(T)=JCM 12128(T)) are proposed for these organisms. Furthermore, phylogenetic data based on 16S rRNA gene sequence analyses correlated with the significant phenotypic differences between members of the lineage encompassing the genera Desulfurobacterium, Thermovibrio and Balnearium and that of the families Aquificaceae and Hydrogenothermaceae. It is therefore proposed that this lineage represents a new family, Desulfurobacteriaceae fam. nov., within the order Aquificales.

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Year:  2006        PMID: 17158986     DOI: 10.1099/ijs.0.63994-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  14 in total

1.  Diversity of 16S rRNA gene, ITS region and aclB gene of the Aquificales.

Authors:  I Ferrera; S Longhorn; A B Banta; Y Liu; D Preston; A-L Reysenbach
Journal:  Extremophiles       Date:  2006-09-20       Impact factor: 2.395

2.  Molecular characterization of the diversity and distribution of a thermal spring microbial community by using rRNA and metabolic genes.

Authors:  Justine R Hall; Kendra R Mitchell; Olan Jackson-Weaver; Ara S Kooser; Brandi R Cron; Laura J Crossey; Cristina D Takacs-Vesbach
Journal:  Appl Environ Microbiol       Date:  2008-06-06       Impact factor: 4.792

3.  Culture dependent and independent analyses of 16S rRNA and ATP citrate lyase genes: a comparison of microbial communities from different black smoker chimneys on the Mid-Atlantic Ridge.

Authors:  James W Voordeckers; My H Do; Michael Hügler; Vivian Ko; Stefan M Sievert; Costantino Vetriani
Journal:  Extremophiles       Date:  2008-06-05       Impact factor: 2.395

Review 4.  Microbial ecology of the dark ocean above, at, and below the seafloor.

Authors:  Beth N Orcutt; Jason B Sylvan; Nina J Knab; Katrina J Edwards
Journal:  Microbiol Mol Biol Rev       Date:  2011-06       Impact factor: 11.056

5.  Archaeal diversity and distribution along thermal and geochemical gradients in hydrothermal sediments at the Yonaguni Knoll IV hydrothermal field in the Southern Okinawa trough.

Authors:  Takuro Nunoura; Hanako Oida; Miwako Nakaseama; Ayako Kosaka; Satoru B Ohkubo; Toru Kikuchi; Hiromi Kazama; Shoko Hosoi-Tanabe; Ko-Ichi Nakamura; Masataka Kinoshita; Hisako Hirayama; Fumio Inagaki; Urumu Tsunogai; Jun-Ichiro Ishibashi; Ken Takai
Journal:  Appl Environ Microbiol       Date:  2009-12-18       Impact factor: 4.792

6.  Characterization of Microaerobacter geothermalis gen. nov., sp. nov., a novel microaerophilic, nitrate- and nitrite-reducing thermophilic bacterium isolated from a terrestrial hot spring in Tunisia.

Authors:  Nadia Khelifi; Emna Ben Romdhane; Abdeljabbar Hedi; Anne Postec; Marie-Laure Fardeau; Moktar Hamdi; Jean-Luc Tholozan; Bernard Ollivier; Agnès Hirschler-Réa
Journal:  Extremophiles       Date:  2010-04-01       Impact factor: 2.395

7.  Lateral gene transfer of family A DNA polymerases between thermophilic viruses, aquificae, and apicomplexa.

Authors:  Thomas W Schoenfeld; Senthil K Murugapiran; Jeremy A Dodsworth; Sally Floyd; Michael Lodes; David A Mead; Brian P Hedlund
Journal:  Mol Biol Evol       Date:  2013-04-22       Impact factor: 16.240

8.  Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent.

Authors:  Markus Göker; Hajnalka Daligault; Romano Mwirichia; Alla Lapidus; Susan Lucas; Shweta Deshpande; Ioanna Pagani; Roxanne Tapia; Jan-Fang Cheng; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Cliff Han; Miriam Land; Loren Hauser; Chongle Pan; Evelyne-Marie Brambilla; Manfred Rohde; Stefan Spring; Johannes Sikorski; Reinhard Wirth; John C Detter; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2011-12-30

9.  Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6).

Authors:  Ahmet Zeytun; Johannes Sikorski; Matt Nolan; Alla Lapidus; Susan Lucas; James Han; Hope Tice; Jan-Fang Cheng; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Olivier D Ngatchou-Djao; Miriam Land; Loren Hauser; Cynthia D Jeffries; Cliff Han; John C Detter; Susanne Ubler; Manfred Rohde; Brian J Tindall; Markus Göker; Reinhard Wirth; Tanja Woyke; James Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos C Kyrpides
Journal:  Stand Genomic Sci       Date:  2011-04-29

10.  Complete genome sequence of Thermovibrio ammonificans HB-1(T), a thermophilic, chemolithoautotrophic bacterium isolated from a deep-sea hydrothermal vent.

Authors:  Donato Giovannelli; Jessica Ricci; Ileana Pérez-Rodríguez; Michael Hügler; Charles O'Brien; Ramaydalis Keddis; Ashley Grosche; Lynne Goodwin; David Bruce; Karen W Davenport; Chris Detter; James Han; Shunsheng Han; Natalia Ivanova; Miriam L Land; Natalia Mikhailova; Matt Nolan; Sam Pitluck; Roxanne Tapia; Tanja Woyke; Costantino Vetriani
Journal:  Stand Genomic Sci       Date:  2012-09-26
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