Literature DB >> 17158612

Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract.

Eline S Klaassens1, Willem M de Vos, Elaine E Vaughan.   

Abstract

A metaproteomics approach comprising two-dimensional gel electrophoresis and matrix-assisted laser desorption ionization-time of flight (mass spectrometry) was applied to the largely uncultured infant fecal microbiota for the first time. The fecal microbial metaproteome profiles changed over time, and one protein spot contained a peptide sequence that showed high similarity to those of bifidobacterial transaldolases.

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Year:  2006        PMID： 17158612      PMCID： PMC1828649          DOI： 10.1128/AEM.01921-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  24 in total

Review 1.  Molecular approaches for the detection and identification of bifidobacteria and lactobacilli in the human gastrointestinal tract.

Authors:  Reetta M Satokari; Elaine E Vaughan; Hauke Smidt; Maria Saarela; Jaana Mättö; Willem M de Vos
Journal:  Syst Appl Microbiol       Date:  2003-11       Impact factor: 4.022

2.  The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms.

Authors:  Paul Wilmes; Philip L Bond
Journal:  Environ Microbiol       Date:  2004-09       Impact factor: 5.491

3.  The Schistosoma mansoni soluble proteome: a comparison across four life-cycle stages.

Authors:  Rachel S Curwen; Peter D Ashton; David A Johnston; R Alan Wilson
Journal:  Mol Biochem Parasitol       Date:  2004-11       Impact factor: 1.759

4.  Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.

Authors:  A Shevchenko; M Wilm; O Vorm; M Mann
Journal:  Anal Chem       Date:  1996-03-01       Impact factor: 6.986

5.  Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria.

Authors:  E G Zoetendal; A D Akkermans; W M De Vos
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

6.  Molecular monitoring of succession of bacterial communities in human neonates.

Authors:  Christine F Favier; Elaine E Vaughan; Willem M De Vos; Antoon D L Akkermans
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

7.  Identification, detection, and enumeration of human bifidobacterium species by PCR targeting the transaldolase gene.

Authors:  Teresa Requena; Jeremy Burton; Takahiro Matsuki; Karen Munro; Mary Alice Simon; Ryuichiro Tanaka; Koichi Watanabe; Gerald W Tannock
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

8.  Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes.

Authors:  A H Franks; H J Harmsen; G C Raangs; G J Jansen; F Schut; G W Welling
Journal:  Appl Environ Microbiol       Date:  1998-09       Impact factor: 4.792

9.  Quantification of uncultured Ruminococcus obeum-like bacteria in human fecal samples by fluorescent in situ hybridization and flow cytometry using 16S rRNA-targeted probes.

Authors:  Erwin G Zoetendal; Kaouther Ben-Amor; Hermie J M Harmsen; Frits Schut; Antoon D L Akkermans; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2002-09       Impact factor: 4.792

10.  Bacterial gene expression detected in human faeces by reverse transcription-PCR.

Authors:  Nora A Fitzsimons; Antoon D L Akkermans; Willem M de Vos; Elaine E Vaughan
Journal:  J Microbiol Methods       Date:  2003-10       Impact factor: 2.363
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  51 in total

1.  Metatranscriptome analysis of the human fecal microbiota reveals subject-specific expression profiles, with genes encoding proteins involved in carbohydrate metabolism being dominantly expressed.

Authors:  Carien C G M Booijink; Jos Boekhorst; Erwin G Zoetendal; Hauke Smidt; Michiel Kleerebezem; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2010-06-18       Impact factor: 4.792

Review 2.  Metagenomic analyses: past and future trends.

Authors:  Carola Simon; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2010-12-17       Impact factor: 4.792

3.  A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry.

Authors:  J D Rudney; H Xie; N L Rhodus; F G Ondrey; T J Griffin
Journal:  Mol Oral Microbiol       Date:  2010-02       Impact factor: 3.563

Review 4.  Systems biology: Functional analysis of natural microbial consortia using community proteomics.

Authors:  Nathan C VerBerkmoes; Vincent J Denef; Robert L Hettich; Jillian F Banfield
Journal:  Nat Rev Microbiol       Date:  2009-03       Impact factor: 60.633

Review 5.  Environmental proteomics: a paradigm shift in characterizing microbial activities at the molecular level.

Authors:  Martin Keller; Robert Hettich
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 6.  Unraveling microbial interactions in food fermentations: from classical to genomics approaches.

Authors:  Sander Sieuwerts; Frank A M de Bok; Jeroen Hugenholtz; Johan E T van Hylckama Vlieg
Journal:  Appl Environ Microbiol       Date:  2008-06-20       Impact factor: 4.792

7.  Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation.

Authors:  Irene González-Rodríguez; Borja Sánchez; Lorena Ruiz; Francesca Turroni; Marco Ventura; Patricia Ruas-Madiedo; Miguel Gueimonde; Abelardo Margolles
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

Review 8.  Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota.

Authors:  Weili Xiong; Paul E Abraham; Zhou Li; Chongle Pan; Robert L Hettich
Journal:  Proteomics       Date:  2015-05-28       Impact factor: 3.984

9.  Gut microbial gene expression in mother-fed and formula-fed piglets.

Authors:  Valeriy Poroyko; James Robert White; Mei Wang; Sharon Donovan; John Alverdy; Donald C Liu; Michael J Morowitz
Journal:  PLoS One       Date:  2010-08-27       Impact factor: 3.240

10.  Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants.

Authors:  Eline S Klaassens; Rolf J Boesten; Monique Haarman; Jan Knol; Frank H Schuren; Elaine E Vaughan; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2009-03-13       Impact factor: 4.792
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