Literature DB >> 17155776

Microcanonical analyses of peptide aggregation processes.

Christoph Junghans1, Michael Bachmann, Wolfhard Janke.   

Abstract

We propose the use of microcanonical analyses for numerical studies of peptide aggregation transitions. Performing multicanonical Monte Carlo simulations of a simple hydrophobic-polar continuum model for interacting heteropolymers of finite length, we find that the microcanonical entropy behaves convex in the transition region, leading to a negative microcanonical specific heat. As this effect is also seen in first-order-like transitions of other finite systems, our results provide clear evidence for recent hints that the characterization of phase separation in first-order-like transitions of finite systems profits from this microcanonical view.

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Year:  2006        PMID: 17155776     DOI: 10.1103/PhysRevLett.97.218103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Generalized replica exchange method.

Authors:  Jaegil Kim; Thomas Keyes; John E Straub
Journal:  J Chem Phys       Date:  2010-06-14       Impact factor: 3.488

2.  Generalized simulated tempering for exploring strong phase transitions.

Authors:  Jaegil Kim; John E Straub
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

3.  Structural basis of folding cooperativity in model proteins: insights from a microcanonical perspective.

Authors:  Tristan Bereau; Markus Deserno; Michael Bachmann
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

4.  Thermodynamic and conformational insights into the phase transition of a single flexible homopolymer chain using replica exchange Monte Carlo method.

Authors:  Lei Wang; Ningning Li; Shiyan Xiao; Haojun Liang
Journal:  J Mol Model       Date:  2014-06-25       Impact factor: 1.810

5.  Microcanonical insights into the physicochemical stability of the coformulation of insulin with amylin analogues.

Authors:  Rafael B Frigori; Fabio Rodrigues
Journal:  J Mol Model       Date:  2021-01-07       Impact factor: 1.810

6.  Interplay between secondary and tertiary structure formation in protein folding cooperativity.

Authors:  Tristan Bereau; Michael Bachmann; Markus Deserno
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

7.  Examining the phase transition behavior of amphiphilic lipids in solution using statistical temperature molecular dynamics and replica-exchange Wang-Landau methods.

Authors:  Lili Gai; Thomas Vogel; Katie A Maerzke; Christopher R Iacovella; David P Landau; Peter T Cummings; Clare McCabe
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

8.  Replica exchange statistical temperature Monte Carlo.

Authors:  Jaegil Kim; Thomas Keyes; John E Straub
Journal:  J Chem Phys       Date:  2009-03-28       Impact factor: 3.488

9.  Diagrams of States of Single Flexible-Semiflexible Multi-Block Copolymer Chains: A Flat-Histogram Monte Carlo Study.

Authors:  Daria Maltseva; Sergey Zablotskiy; Julia Martemyanova; Viktor Ivanov; Timur Shakirov; Wolfgang Paul
Journal:  Polymers (Basel)       Date:  2019-04-30       Impact factor: 4.329

  9 in total

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