Literature DB >> 17154275

AFM fishing nanotechnology is the way to reverse the Avogadro number in proteomics.

Alexander Ivanovich Archakov1, Yurii Dmitrievich Ivanov, Andrey Valerevich Lisitsa, Victor Gavrilovich Zgoda.   

Abstract

Future development of proteomics may be hindered by limitations in the concentration sensitivity of widespread technological approaches. The concentration sensitivity limit (CSL) of currently used approaches, like 2-DE/LC separation coupled with MS detection, etc., varies from 10(-9) to 10(-12) M. Therefore, proteomic technologies enable detection of up to 20% of the protein species present in the plasma. New technologies, like atomic force microscopy (AFM molecular detector), enable the counting of single molecules, whereas biospecific fishing can be used to capture these molecules from the biomaterial. At the same time, fishing also has thermodynamic limitations due to the reversibility of the binding. In cases where the fishing becomes irreversible, its combination with an AFM detector enables the registration of single protein molecules, and that opens up a way to lower the CSL down to the reverse Avogadro number.

Mesh:

Year:  2007        PMID: 17154275     DOI: 10.1002/pmic.200600467

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  13 in total

Review 1.  Sampling protein form and function with the atomic force microscope.

Authors:  Marian Baclayon; Wouter H Roos; Gijs J L Wuite
Journal:  Mol Cell Proteomics       Date:  2010-06-18       Impact factor: 5.911

Review 2.  Potential role of atomic force microscopy in systems biology.

Authors:  Srinivasan Ramachandran; Fernando Teran Arce; Ratnesh Lal
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-07-15

3.  Comparative proteomic analysis of secreted proteins from nasopharyngeal carcinoma-associated stromal fibroblasts and normal fibroblasts.

Authors:  Shenglei Ge; Yitao Mao; Yan Yi; Dinghua Xie; Zhuchu Chen; Zhiqiang Xiao
Journal:  Exp Ther Med       Date:  2012-02-13       Impact factor: 2.447

4.  Application of catalyst-free click reactions in attaching affinity molecules to tips of atomic force microscopy for detection of protein biomarkers.

Authors:  Subhadip Senapati; Saikat Manna; Stuart Lindsay; Peiming Zhang
Journal:  Langmuir       Date:  2013-11-15       Impact factor: 3.882

5.  Atomic force microscopy fishing and mass spectrometry identification of gp120 on immobilized aptamers.

Authors:  Yuri D Ivanov; Natalia S Bukharina; Tatyana O Pleshakova; Pavel A Frantsuzov; Elena Yu Andreeva; Anna L Kaysheva; Victor G Zgoda; Alexander A Izotov; Tatyana I Pavlova; Vadim S Ziborov; Sergey P Radko; Sergei A Moshkovskii; Alexander I Archakov
Journal:  Int J Nanomedicine       Date:  2014-10-03

6.  Highly sensitive protein detection by biospecific AFM-based fishing with pulsed electrical stimulation.

Authors:  Tatyana O Pleshakova; Kristina A Malsagova; Anna L Kaysheva; Arthur T Kopylov; Vadim Yu Tatur; Vadim S Ziborov; Sergey L Kanashenko; Rafael A Galiullin; Yuri D Ivanov
Journal:  FEBS Open Bio       Date:  2017-07-10       Impact factor: 2.693

7.  Micro-Raman Characterization of Structural Features of High-k Stack Layer of SOI Nanowire Chip, Designed to Detect Circular RNA Associated with the Development of Glioma.

Authors:  Yuri D Ivanov; Kristina A Malsagova; Vladimir P Popov; Igor N Kupriyanov; Tatyana O Pleshakova; Rafael A Galiullin; Vadim S Ziborov; Alexander Yu Dolgoborodov; Oleg F Petrov; Andrey V Miakonkikh; Konstantin V Rudenko; Alexander V Glukhov; Alexander Yu Smirnov; Dmitry Yu Usachev; Olga A Gadzhieva; Boris A Bashiryan; Vadim N Shimansky; Dmitry V Enikeev; Natalia V Potoldykova; Alexander I Archakov
Journal:  Molecules       Date:  2021-06-18       Impact factor: 4.411

8.  Single-molecule spectroscopy of amino acids and peptides by recognition tunnelling.

Authors:  Yanan Zhao; Brian Ashcroft; Peiming Zhang; Hao Liu; Suman Sen; Weisi Song; JongOne Im; Brett Gyarfas; Saikat Manna; Sovan Biswas; Chad Borges; Stuart Lindsay
Journal:  Nat Nanotechnol       Date:  2014-04-06       Impact factor: 39.213

Review 9.  The Size of the Human Proteome: The Width and Depth.

Authors:  Elena A Ponomarenko; Ekaterina V Poverennaya; Ekaterina V Ilgisonis; Mikhail A Pyatnitskiy; Arthur T Kopylov; Victor G Zgoda; Andrey V Lisitsa; Alexander I Archakov
Journal:  Int J Anal Chem       Date:  2016-05-19       Impact factor: 1.885

Review 10.  Atomic Force Microscopy for Protein Detection and Their Physicoсhemical Characterization.

Authors:  Tatyana O Pleshakova; Natalia S Bukharina; Alexander I Archakov; Yuri D Ivanov
Journal:  Int J Mol Sci       Date:  2018-04-10       Impact factor: 5.923

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