Literature DB >> 17147399

Development and validation of an integrated computational approach for the modeling of cw-ESR spectra of free radicals in solution: p-(methylthio)phenyl nitronylnitroxide in toluene as a case study.

Vincenzo Barone1, Marina Brustolon, Paola Cimino, Antonino Polimeno, Mirco Zerbetto, Alfonso Zoleo.   

Abstract

In this work we address the interpretation, via an ab initio integrated computational approach, of continuous wave electron spin resonance (cw-ESR) spectra of p-(methylthio)phenyl nitronylnitroxide (MTPNN) dissolved in toluene. Our approach is based on the determination of the spin Hamiltonian, averaged with respect to fast vibrational motions, with magnetic tensor parameters (Zeeman and hyperfine tensors) characterized by quantum mechanical density functional calculations. The system is then described by a stochastic Liouville equation, with inclusion of diffusive rotational dynamics. Parametrization of diffusion rotational tensor is provided by a hydrodynamic model. Cw-ESR spectra of MTPNN are simulated for a wide range of temperatures (155-292 K) with minimal resorting to fitting procedures, proving that the combination of sensitive ESR spectroscopy and sophisticated modeling can be highly helpful in providing structural and dynamic information on molecular systems.

Entities:  

Year:  2006        PMID: 17147399     DOI: 10.1021/ja065475q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

Review 1.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

2.  An improved picture of methyl dynamics in proteins from slowly relaxing local structure analysis of 2H spin relaxation.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem B       Date:  2007-10-17       Impact factor: 2.991

3.  Backbone dynamics of deoxy and carbonmonoxy hemoglobin by NMR/SRLS.

Authors:  Eva Meirovitch; Mirco Zerbetto; Antonino Polimeno; Jack H Freed
Journal:  J Phys Chem B       Date:  2010-12-16       Impact factor: 2.991

4.  Methyl dynamics of a Ca2+-calmodulin-peptide complex from NMR/SRLS.

Authors:  Yury E Shapiro; Antonino Polimeno; Jack H Freed; Eva Meirovitch
Journal:  J Phys Chem B       Date:  2010-12-17       Impact factor: 2.991

5.  Frequency dependence of electron spin relaxation times in aqueous solution for a nitronyl nitroxide radical and perdeuterated-tempone between 250 MHz and 34 GHz.

Authors:  Joshua R Biller; Virginia M Meyer; Hanan Elajaili; Gerald M Rosen; Sandra S Eaton; Gareth R Eaton
Journal:  J Magn Reson       Date:  2012-10-17       Impact factor: 2.229

6.  Toward a General Yet Effective Computational Approach for Diffusive Problems: Variable Diffusion Tensor and DVR Solution of the Smoluchowski Equation along a General One-Dimensional Coordinate.

Authors:  Andrea Piserchia; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2016-07-25       Impact factor: 6.006

  6 in total

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