Literature DB >> 17146616

Cell-free synthesis of zinc-binding proteins.

Takayoshi Matsuda1, Takanori Kigawa, Seizo Koshiba, Makoto Inoue, Masaaki Aoki, Kazuhiko Yamasaki, Motoaki Seki, Kazuo Shinozaki, Shigeyuki Yokoyama.   

Abstract

Cell-free protein synthesis has become one of the standard methods for protein expression. The cell-free method is suitable for the synthesis of a protein that requires a ligand for its enzymatic activity and/or structure formation and stabilization, since it is an open system, which allows us to add the proper ligand to the reaction mixture. A large number of proteins that require zinc for their function are involved in diverse cellular processes, including transcription, DNA replication, metabolism, and cell signaling. In this study, we analyzed the effects of zinc on the cell-free synthesis of plant-specific zinc-binding transcription factors. The solubility and/or stability of the proteins were significantly increased in the presence of the proper concentration of zinc during the cell-free reaction. NMR analyses confirmed that correctly folded proteins were synthesized by the cell-free method. These results indicate that the cell-free method can be used to synthesize correctly folded and functional zinc-binding proteins.

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Year:  2006        PMID: 17146616     DOI: 10.1007/s10969-006-9012-1

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  22 in total

1.  An overview of structural genomics.

Authors:  S K Burley
Journal:  Nat Struct Biol       Date:  2000-11

Review 2.  Protein expression systems for structural genomics and proteomics.

Authors:  Shigeyuki Yokoyama
Journal:  Curr Opin Chem Biol       Date:  2003-02       Impact factor: 8.822

3.  Metalloproteomics: high-throughput structural and functional annotation of proteins in structural genomics.

Authors:  Wuxian Shi; Chenyang Zhan; Alexander Ignatov; Babu A Manjasetty; Nebojsa Marinkovic; Michael Sullivan; Raymond Huang; Mark R Chance
Journal:  Structure       Date:  2005-10       Impact factor: 5.006

4.  An Arabidopsis SBP-domain fragment with a disrupted C-terminal zinc-binding site retains its tertiary structure.

Authors:  Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Journal:  FEBS Lett       Date:  2006-03-20       Impact factor: 4.124

5.  A highly efficient cell-free protein synthesis system from Escherichia coli.

Authors:  D M Kim; T Kigawa; C Y Choi; S Yokoyama
Journal:  Eur J Biochem       Date:  1996-08-01

6.  Simultaneous expression and maturation of the iron-sulfur protein ferredoxin in a cell-free system.

Authors:  Marcus E Boyer; Chia-Wei Wang; James R Swartz
Journal:  Biotechnol Bioeng       Date:  2006-05-05       Impact factor: 4.530

7.  A continuous cell-free translation system capable of producing polypeptides in high yield.

Authors:  A S Spirin; V I Baranov; L A Ryabova; S Y Ovodov; Y B Alakhov
Journal:  Science       Date:  1988-11-25       Impact factor: 47.728

8.  Solution structure of an Arabidopsis WRKY DNA binding domain.

Authors:  Kazuhiko Yamasaki; Takanori Kigawa; Makoto Inoue; Masaru Tateno; Tomoko Yamasaki; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Nobuhiro Hayami; Takaho Terada; Mikako Shirouzu; Akiko Tanaka; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Journal:  Plant Cell       Date:  2005-02-10       Impact factor: 11.277

9.  Cell-free production and stable-isotope labeling of milligram quantities of proteins.

Authors:  T Kigawa; T Yabuki; Y Yoshida; M Tsutsui; Y Ito; T Shibata; S Yokoyama
Journal:  FEBS Lett       Date:  1999-01-08       Impact factor: 4.124

10.  A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.

Authors:  J Klein; H Saedler; P Huijser
Journal:  Mol Gen Genet       Date:  1996-01-15
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  10 in total

1.  RING domain mutations uncouple TRIM5α restriction of HIV-1 from inhibition of reverse transcription and acceleration of uncoating.

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Journal:  J Virol       Date:  2011-11-23       Impact factor: 5.103

2.  Structural basis for sequence-specific DNA recognition by an Arabidopsis WRKY transcription factor.

Authors:  Kazuhiko Yamasaki; Takanori Kigawa; Satoru Watanabe; Makoto Inoue; Tomoko Yamasaki; Motoaki Seki; Kazuo Shinozaki; Shigeyuki Yokoyama
Journal:  J Biol Chem       Date:  2012-01-04       Impact factor: 5.157

Review 3.  Protein production and purification.

Authors:  Susanne Gräslund; Pär Nordlund; Johan Weigelt; B Martin Hallberg; James Bray; Opher Gileadi; Stefan Knapp; Udo Oppermann; Cheryl Arrowsmith; Raymond Hui; Jinrong Ming; Sirano dhe-Paganon; Hee-won Park; Alexei Savchenko; Adelinda Yee; Aled Edwards; Renaud Vincentelli; Christian Cambillau; Rosalind Kim; Sung-Hou Kim; Zihe Rao; Yunyu Shi; Thomas C Terwilliger; Chang-Yub Kim; Li-Wei Hung; Geoffrey S Waldo; Yoav Peleg; Shira Albeck; Tamar Unger; Orly Dym; Jaime Prilusky; Joel L Sussman; Ray C Stevens; Scott A Lesley; Ian A Wilson; Andrzej Joachimiak; Frank Collart; Irina Dementieva; Mark I Donnelly; William H Eschenfeldt; Youngchang Kim; Lucy Stols; Ruying Wu; Min Zhou; Stephen K Burley; J Spencer Emtage; J Michael Sauder; Devon Thompson; Kevin Bain; John Luz; Tarun Gheyi; Fred Zhang; Shane Atwell; Steven C Almo; Jeffrey B Bonanno; Andras Fiser; Sivasubramanian Swaminathan; F William Studier; Mark R Chance; Andrej Sali; Thomas B Acton; Rong Xiao; Li Zhao; Li Chung Ma; John F Hunt; Liang Tong; Kellie Cunningham; Masayori Inouye; Stephen Anderson; Heleema Janjua; Ritu Shastry; Chi Kent Ho; Dongyan Wang; Huang Wang; Mei Jiang; Gaetano T Montelione; David I Stuart; Raymond J Owens; Susan Daenke; Anja Schütz; Udo Heinemann; Shigeyuki Yokoyama; Konrad Büssow; Kristin C Gunsalus
Journal:  Nat Methods       Date:  2008-02       Impact factor: 28.547

4.  A robust two-step PCR method of template DNA production for high-throughput cell-free protein synthesis.

Authors:  Takashi Yabuki; Yoko Motoda; Kazuharu Hanada; Emi Nunokawa; Miyuki Saito; Eiko Seki; Makoto Inoue; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  J Struct Funct Genomics       Date:  2008-01-01

5.  Solution structure of IseA, an inhibitor protein of DL-endopeptidases from Bacillus subtilis, reveals a novel fold with a characteristic inhibitory loop.

Authors:  Ryoichi Arai; Sadaharu Fukui; Naoya Kobayashi; Junichi Sekiguchi
Journal:  J Biol Chem       Date:  2012-10-22       Impact factor: 5.157

6.  Improving cell-free protein synthesis for stable-isotope labeling.

Authors:  Takayoshi Matsuda; Seizo Koshiba; Naoya Tochio; Eiko Seki; Noriyuki Iwasaki; Takashi Yabuki; Makoto Inoue; Shigeyuki Yokoyama; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

7.  Nickel quercetinase, a "promiscuous" metalloenzyme: metal incorporation and metal ligand substitution studies.

Authors:  Dimitrios Nianios; Sven Thierbach; Lenz Steimer; Pavel Lulchev; Dagmar Klostermeier; Susanne Fetzner
Journal:  BMC Biochem       Date:  2015-04-23       Impact factor: 4.059

8.  Cell-free synthesis of functional antibody fragments to provide a structural basis for antibody-antigen interaction.

Authors:  Takayoshi Matsuda; Takuhiro Ito; Chie Takemoto; Kazushige Katsura; Mariko Ikeda; Motoaki Wakiyama; Mutsuko Kukimoto-Niino; Shigeyuki Yokoyama; Yoshikazu Kurosawa; Mikako Shirouzu
Journal:  PLoS One       Date:  2018-02-20       Impact factor: 3.240

9.  Simplification of the genetic code: restricted diversity of genetically encoded amino acids.

Authors:  Akio Kawahara-Kobayashi; Akiko Masuda; Yuhei Araiso; Yoko Sakai; Atsushi Kohda; Masahiko Uchiyama; Shun Asami; Takayoshi Matsuda; Ryuichiro Ishitani; Naoshi Dohmae; Shigeyuki Yokoyama; Takanori Kigawa; Osamu Nureki; Daisuke Kiga
Journal:  Nucleic Acids Res       Date:  2012-08-21       Impact factor: 16.971

10.  In vitro transcription-translation using bacterial genome as a template to reconstitute intracellular profile.

Authors:  Kei Fujiwara; Tsunehito Sawamura; Tatsuya Niwa; Tatsuki Deyama; Shin-Ichiro M Nomura; Hideki Taguchi; Nobuhide Doi
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

  10 in total

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