Literature DB >> 11103991

An overview of structural genomics.

S K Burley1.   

Abstract

With access to sequences of entire human genomes plus those of various model organisms and many important microbial pathogens, structural biology is on the verge of a dramatic transformation. Our newfound wealth of sequence information will serve as the foundation for an important initiative in structural genomics. We are poised to embark on a systematic program of high-throughput X-ray crystallography and NMR spectroscopy aimed at developing a comprehensive view of the protein structure universe. Structural genomics will yield a large number of experimental protein structures (tens of thousands) and an even larger number of calculated comparative protein structure models (millions). This enormous body of structural data will be freely available, and promises to accelerate scientific discovery in all areas of biological science, including biodiversity and evolution in natural ecosystems, agricultural plant genetics, breeding of farm and domestic animals, and human health and disease.

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Year:  2000        PMID: 11103991     DOI: 10.1038/80697

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  70 in total

1.  GTOP: a database of protein structures predicted from genome sequences.

Authors:  Takeshi Kawabata; Satoshi Fukuchi; Keiichi Homma; Motonori Ota; Jiro Araki; Takehiko Ito; Nobuyuki Ichiyoshi; Ken Nishikawa
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome.

Authors:  Daisuke Kihara; Yang Zhang; Hui Lu; Andrzej Kolinski; Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

3.  Homology modelling and structural analysis of human arylamine N-acetyltransferase NAT1: evidence for the conservation of a cysteine protease catalytic domain and an active-site loop.

Authors:  F Rodrigues-Lima; C Deloménie; G H Goodfellow; D M Grant; J M Dupret
Journal:  Biochem J       Date:  2001-06-01       Impact factor: 3.857

Review 4.  Exploring privileged structures: the combinatorial synthesis of cyclic peptides.

Authors:  Douglas A Horton; Gregory T Bourne; Mark L Smythe
Journal:  J Comput Aided Mol Des       Date:  2002 May-Jun       Impact factor: 3.686

5.  Secure web book to store structural genomics research data.

Authors:  Babu A Manjasetty; Klaus Höppner; Uwe Mueller; Udo Heinemann
Journal:  J Struct Funct Genomics       Date:  2003

6.  From protein structure to biochemical function?

Authors:  Roman A Laskowski; James D Watson; Janet M Thornton
Journal:  J Struct Funct Genomics       Date:  2003

7.  Automated protein fold determination using a minimal NMR constraint strategy.

Authors:  Deyou Zheng; Yuanpeng J Huang; Hunter N B Moseley; Rong Xiao; James Aramini; G V T Swapna; Gaetano T Montelione
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

8.  SPINE 2: a system for collaborative structural proteomics within a federated database framework.

Authors:  Chern-Sing Goh; Ning Lan; Nathaniel Echols; Shawn M Douglas; Duncan Milburn; Paul Bertone; Rong Xiao; Li-Chung Ma; Deyou Zheng; Zeba Wunderlich; Tom Acton; Gaetano T Montelione; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2003-06-01       Impact factor: 16.971

9.  Accurate and automated classification of protein secondary structure with PsiCSI.

Authors:  Ling-Hong Hung; Ram Samudrala
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

Review 10.  Exploring privileged structures: the combinatorial synthesis of cyclic peptides.

Authors:  Douglas A Horton; Gregory T Bourne; Mark L Smythe
Journal:  Mol Divers       Date:  2002       Impact factor: 2.943

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