Literature DB >> 17142918

Crystallization and preliminary X-ray analysis of human MTH1 complexed with two oxidized nucleotides, 8-oxo-dGMP and 2-oxo-dATP.

Teruya Nakamura1, Yuki Kitaguchi, Masayuki Miyazawa, Hiroyuki Kamiya, Sachiko Toma, Shinji Ikemizu, Masahiro Shirakawa, Yusaku Nakabeppu, Yuriko Yamagata.   

Abstract

Human MutT homologue 1 (hMTH1) hydrolyzes a variety of oxidized purine nucleoside triphosphates, including 8-oxo-dGTP, 2-oxo-dATP, 2-oxo-ATP and 8-oxo-dATP, to their corresponding nucleoside monophosphates, while Escherichia coli MutT possesses prominent substrate specificity for 8-oxoguanine nucleotides. Three types of crystals were obtained corresponding to the following complexes: selenomethionine-labelled hMTH1 with 8-oxo-dGMP (SeMet hMTH1-8-oxo-dGMP), hMTH1 with 8-oxo-dGMP (hMTH1-8-oxo-dGMP) and hMTH1 with 2-oxo-dATP (hMTH1-2-oxo-dATP). Crystals of the SeMet hMTH1-8-oxo-dGMP complex belong to space group P4(1)2(1)2, with unit-cell parameters a = b = 45.8, c = 153.6 A, and diffracted to 2.90 A. Crystals of hMTH1-8-oxo-dGMP and hMTH1-2-oxo-dATP belong to space groups P2(1) and P2(1)2(1)2(1), with unit-cell parameters a = 34.0, b = 59.0, c = 65.9 A, beta = 90.7 degrees and a = 59.2, b = 67.3, c = 80.0 A, respectively. Their diffraction data were collected at resolutions of 1.95 and 2.22 A, respectively.

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Year:  2006        PMID: 17142918      PMCID: PMC2225359          DOI: 10.1107/S1744309106049529

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Counteraction by MutT protein of transcriptional errors caused by oxidative damage.

Authors:  F Taddei; H Hayakawa; M Bouton; A Cirinesi; I Matic; M Sekiguchi; M Radman
Journal:  Science       Date:  1997-10-03       Impact factor: 47.728

2.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 3.  The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes.

Authors:  M J Bessman; D N Frick; S F O'Handley
Journal:  J Biol Chem       Date:  1996-10-11       Impact factor: 5.157

4.  Induction of chromosomal gene mutations in Escherichia coli by direct incorporation of oxidatively damaged nucleotides. New evaluation method for mutagenesis by damaged DNA precursors in vivo.

Authors:  M Inoue; H Kamiya; K Fujikawa; Y Ootsuyama; N Murata-Kamiya; T Osaki; K Yasumoto; H Kasai
Journal:  J Biol Chem       Date:  1998-05-01       Impact factor: 5.157

5.  Preparation of selenomethionyl proteins for phase determination.

Authors:  S Doublié
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Multiple enzyme activities of Escherichia coli MutT protein for sanitization of DNA and RNA precursor pools.

Authors:  Riyoko Ito; Hiroshi Hayakawa; Mutsuo Sekiguchi; Toru Ishibashi
Journal:  Biochemistry       Date:  2005-05-03       Impact factor: 3.162

7.  The oxidized forms of dATP are substrates for the human MutT homologue, the hMTH1 protein.

Authors:  K Fujikawa; H Kamiya; H Yakushiji; Y Fujii; Y Nakabeppu; H Kasai
Journal:  J Biol Chem       Date:  1999-06-25       Impact factor: 5.157

8.  Formation of 2-hydroxydeoxyadenosine triphosphate, an oxidatively damaged nucleotide, and its incorporation by DNA polymerases. Steady-state kinetics of the incorporation.

Authors:  H Kamiya; H Kasai
Journal:  J Biol Chem       Date:  1995-08-18       Impact factor: 5.157

9.  MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis.

Authors:  H Maki; M Sekiguchi
Journal:  Nature       Date:  1992-01-16       Impact factor: 49.962

10.  1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type.

Authors:  D M LeMaster; F M Richards
Journal:  Biochemistry       Date:  1985-12-03       Impact factor: 3.162

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  5 in total

1.  Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base.

Authors:  Teruya Nakamura; Sachiko Meshitsuka; Seiju Kitagawa; Nanase Abe; Junichi Yamada; Tetsuya Ishino; Hiroaki Nakano; Teruhisa Tsuzuki; Takefumi Doi; Yuji Kobayashi; Satoshi Fujii; Mutsuo Sekiguchi; Yuriko Yamagata
Journal:  J Biol Chem       Date:  2009-10-28       Impact factor: 5.157

2.  Crystallization and preliminary X-ray analysis of human MTH1 with a homogeneous N-terminus.

Authors:  Yukari Koga; Miyuki Inazato; Teruya Nakamura; Chie Hashikawa; Mami Chirifu; Asuka Michi; Taku Yamashita; Sachiko Toma; Akihiko Kuniyasu; Shinji Ikemizu; Yusaku Nakabeppu; Yuriko Yamagata
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-12-20

3.  Human MTH3 (NUDT18) protein hydrolyzes oxidized forms of guanosine and deoxyguanosine diphosphates: comparison with MTH1 and MTH2.

Authors:  Yasumitsu Takagi; Daiki Setoyama; Riyoko Ito; Hiroyuki Kamiya; Yuriko Yamagata; Mutsuo Sekiguchi
Journal:  J Biol Chem       Date:  2012-05-03       Impact factor: 5.157

4.  Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase.

Authors:  Teruya Nakamura; Yuriko Yamagata
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-20       Impact factor: 12.779

5.  Structural and Kinetic Studies of the Human Nudix Hydrolase MTH1 Reveal the Mechanism for Its Broad Substrate Specificity.

Authors:  Shaimaa Waz; Teruya Nakamura; Keisuke Hirata; Yukari Koga-Ogawa; Mami Chirifu; Takao Arimori; Taro Tamada; Shinji Ikemizu; Yusaku Nakabeppu; Yuriko Yamagata
Journal:  J Biol Chem       Date:  2016-12-29       Impact factor: 5.157

  5 in total

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