Literature DB >> 17139332

Editor meets silencer: crosstalk between RNA editing and RNA interference.

Kazuko Nishikura1.   

Abstract

The most prevalent type of RNA editing is mediated by ADAR (adenosine deaminase acting on RNA) enzymes, which convert adenosines to inosines (a process known as A-->I RNA editing) in double-stranded (ds)RNA substrates. A-->I RNA editing was long thought to affect only selected transcripts by altering the proteins they encode. However, genome-wide screening has revealed numerous editing sites within inverted Alu repeats in introns and untranslated regions. Also, recent evidence indicates that A-->I RNA editing crosstalks with RNA-interference pathways, which, like A-->I RNA editing, involve dsRNAs. A-->I RNA editing therefore seems to have additional functions, including the regulation of retrotransposons and gene silencing, which adds a new urgency to the challenges of fully understanding ADAR functions.

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Year:  2006        PMID: 17139332      PMCID: PMC2953463          DOI: 10.1038/nrm2061

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  112 in total

1.  Editing the message from A to I.

Authors:  Kazuko Nishikura
Journal:  Nat Biotechnol       Date:  2004-08       Impact factor: 54.908

Review 2.  Mechanisms of gene silencing by double-stranded RNA.

Authors:  Gunter Meister; Thomas Tuschl
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

3.  Widespread RNA editing of embedded alu elements in the human transcriptome.

Authors:  Dennis D Y Kim; Thomas T Y Kim; Thomas Walsh; Yoshifumi Kobayashi; Tara C Matise; Steven Buyske; Abram Gabriel
Journal:  Genome Res       Date:  2004-09       Impact factor: 9.043

4.  RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency.

Authors:  M Higuchi; F N Single; M Köhler; B Sommer; R Sprengel; P H Seeburg
Journal:  Cell       Date:  1993-12-31       Impact factor: 41.582

5.  The Epstein-Barr virus nuclear protein 2 acidic domain forms a complex with a novel cellular coactivator that can interact with TFIIE.

Authors:  X Tong; R Drapkin; R Yalamanchili; G Mosialos; E Kieff
Journal:  Mol Cell Biol       Date:  1995-09       Impact factor: 4.272

6.  The cytoplasm of Xenopus oocytes contains a factor that protects double-stranded RNA from adenosine-to-inosine modification.

Authors:  L Saccomanno; B L Bass
Journal:  Mol Cell Biol       Date:  1994-08       Impact factor: 4.272

7.  Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts.

Authors:  F Lai; R Drakas; K Nishikura
Journal:  J Biol Chem       Date:  1995-07-21       Impact factor: 5.157

8.  Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing.

Authors:  U Kim; Y Wang; T Sanford; Y Zeng; K Nishikura
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

9.  Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: evidence for two forms of the deaminase.

Authors:  J B Patterson; C E Samuel
Journal:  Mol Cell Biol       Date:  1995-10       Impact factor: 4.272

10.  Substrate specificity of the dsRNA unwinding/modifying activity.

Authors:  K Nishikura; C Yoo; U Kim; J M Murray; P A Estes; F E Cash; S A Liebhaber
Journal:  EMBO J       Date:  1991-11       Impact factor: 11.598

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  136 in total

1.  In search of beneficial coding RNA editing.

Authors:  Guixia Xu; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2014-11-12       Impact factor: 16.240

Review 2.  Evolution of microRNA diversity and regulation in animals.

Authors:  Eugene Berezikov
Journal:  Nat Rev Genet       Date:  2011-11-18       Impact factor: 53.242

Review 3.  Biological significance of RNA editing in cells.

Authors:  Wei Tang; Yongjun Fei; Michael Page
Journal:  Mol Biotechnol       Date:  2012-09       Impact factor: 2.695

Review 4.  Regulation of small RNA stability: methylation and beyond.

Authors:  Lijuan Ji; Xuemei Chen
Journal:  Cell Res       Date:  2012-03-13       Impact factor: 25.617

Review 5.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

6.  Minor-groove-modulating adenosine replacements control protein binding and RNAi activity in siRNAs.

Authors:  Hayden Peacock; Erik Fostvedt; Peter A Beal
Journal:  ACS Chem Biol       Date:  2010-10-07       Impact factor: 5.100

Review 7.  RNA surveillance-an emerging role for RNA regulatory networks in aging.

Authors:  Monty Montano; Kimberly Long
Journal:  Ageing Res Rev       Date:  2010-02-17       Impact factor: 10.895

8.  Redirection of silencing targets by adenosine-to-inosine editing of miRNAs.

Authors:  Yukio Kawahara; Boris Zinshteyn; Praveen Sethupathy; Hisashi Iizasa; Artemis G Hatzigeorgiou; Kazuko Nishikura
Journal:  Science       Date:  2007-02-23       Impact factor: 47.728

9.  miRNA editing--we should have inosine this coming.

Authors:  Jeffrey W Habig; Taraka Dale; Brenda L Bass
Journal:  Mol Cell       Date:  2007-03-23       Impact factor: 17.970

10.  Promiscuous 8-alkoxyadenosines in the guide strand of an siRNA: modulation of silencing efficacy and off-pathway protein binding.

Authors:  Uday Ghanty; Erik Fostvedt; Rachel Valenzuela; Peter A Beal; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2012-10-11       Impact factor: 15.419

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