Literature DB >> 17132795

Multiscale modeling of calcium signaling in the cardiac dyad.

Raimond L Winslow1, Antti Tanskanen, Mindao Chen, Joseph L Greenstein.   

Abstract

Calcium (Ca(2+))-induced Ca(2+)-release (CICR) takes place in spatially restricted microdomains known as dyads. The length scale over which CICR occurs is on the order of nanometers and relevant time scales range from micro- to milliseconds. Quantitative understanding of CICR therefore requires development of models that are applicable over a range of spatio-temporal scales. We will present several new approaches for multiscale modeling of CICR. First, we present a model of dyad Ca(2+) dynamics in which the Fokker-Planck equation (FPE) is solved for the probability P(x, t) that a Ca(2+) ion is located at dyad position x at time t. Using this model, we demonstrate that (a) Ca(2+) signaling in the dyad is mediated by approximately tens of Ca(2+) ions; (b) these signaling events are noisy due to the small number of ions involved; and (c) the geometry of the RyR (ryanodine receptors) protein may function to restrict the diffusion of and to "funnel" Ca(2+) ions to activation-binding sites on the RyR, thus increasing RyR open probability and excitation-contraction (EC) coupling gain. Simplification of this model to one in which the dyadic space is represented using a single compartment yields the stochastic local-control model of CICR developed previously. We have shown that this model captures fundamental properties of CICR, such as graded release and voltage-dependent gain, may be integrated within a model of the myocyte and may be simulated in reasonable times using a combination of efficient numerical methods and parallel computing, but remains too complex for general use in cell simulations. To address this problem, we show how separation of time scales may be used to formulate a model in which nearby L-type Ca(2+) channels (LCCs) and RyRs gate as a coupled system that may be described using low-dimensional systems of ordinary differential equations, thus reducing computational complexity while capturing fundamentally important properties of CICR. The simplified model may be solved many orders of magnitude faster than can either of the more detailed models, thus enabling incorporation into tissue-level simulations.

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Year:  2006        PMID: 17132795     DOI: 10.1196/annals.1380.027

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  11 in total

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2.  Stochastic simulation of calcium microdomains in the vicinity of an L-type calcium channel.

Authors:  Frederic von Wegner; R H A Fink
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3.  Modeling CICR in rat ventricular myocytes: voltage clamp studies.

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Journal:  J Biomed Biotechnol       Date:  2011-11-09

7.  Microdomain calcium fluctuations as a colored noise process.

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Review 8.  Images as drivers of progress in cardiac computational modelling.

Authors:  Pablo Lamata; Ramón Casero; Valentina Carapella; Steve A Niederer; Martin J Bishop; Jürgen E Schneider; Peter Kohl; Vicente Grau
Journal:  Prog Biophys Mol Biol       Date:  2014-08-10       Impact factor: 3.667

9.  True Molecular Scale Visualization of Variable Clustering Properties of Ryanodine Receptors.

Authors:  Isuru Jayasinghe; Alexander H Clowsley; Ruisheng Lin; Tobias Lutz; Carl Harrison; Ellen Green; David Baddeley; Lorenzo Di Michele; Christian Soeller
Journal:  Cell Rep       Date:  2018-01-09       Impact factor: 9.423

10.  Discrete-state stochastic models of calcium-regulated calcium influx and subspace dynamics are not well-approximated by ODEs that neglect concentration fluctuations.

Authors:  Seth H Weinberg; Gregory D Smith
Journal:  Comput Math Methods Med       Date:  2012-12-29       Impact factor: 2.238

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