Literature DB >> 17131061

Recent structural studies of carbohydrate-binding modules.

H Hashimoto1.   

Abstract

Carbohydrate-binding modules (CBMs) are found in many carbohydrate-active enzymes. CBMs bind to a range of polysaccharides, their primary function being to increase the catalytic efficiency of the carbohydrate-active enzymes against soluble and/or insoluble substrates. CBMs bind to their target ligands with high specificities and affinities. Thus, CBM systems are excellent models to study the mechanism of protein-carbohydrate interaction. To date, CBMs have been classified into 45 different families and many structural and functional studies have been reported. At present, three-dimensional structures of CBMs from 31 different families have been determined. These structures demonstrate that the fold most commonly found in CBMs is the beta-sandwich. In the past few years, about 10 new structures from different families have been reported. These enable detailed classification of CBM structures. This article reviews recent structural and functional studies of CBMs and discusses the sub-classification of beta-sandwich CBMs.

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Year:  2006        PMID: 17131061     DOI: 10.1007/s00018-006-6195-3

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  41 in total

1.  Structure of CBM3b of the major cellulosomal scaffoldin subunit ScaA from Acetivibrio cellulolyticus.

Authors:  Oren Yaniv; Yehuda Halfon; Linda J W Shimon; Edward A Bayer; Raphael Lamed; Felix Frolow
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

2.  Chimeric cellulase matrix for investigating intramolecular synergism between non-hydrolytic disruptive functions of carbohydrate-binding modules and catalytic hydrolysis.

Authors:  Yuguo Wang; Rentao Tang; Jin Tao; Xiaonan Wang; Baisong Zheng; Yan Feng
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

3.  Characterization of Thermobifida fusca cutinase-carbohydrate-binding module fusion proteins and their potential application in bioscouring.

Authors:  Yao Zhang; Sheng Chen; Meng Xu; Artur Cavaco-Paulo; Artur Cavoco-Paulo; Jing Wu; Jian Chen
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

4.  Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting.

Authors:  Isolde Le Trong; Pavel Aprikian; Brian A Kidd; Manu Forero-Shelton; Veronika Tchesnokova; Ponni Rajagopal; Victoria Rodriguez; Gianluca Interlandi; Rachel Klevit; Viola Vogel; Ronald E Stenkamp; Evgeni V Sokurenko; Wendy E Thomas
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

5.  Solution structure of the silkworm betaGRP/GNBP3 N-terminal domain reveals the mechanism for beta-1,3-glucan-specific recognition.

Authors:  Kiyohiro Takahasi; Masanori Ochiai; Masataka Horiuchi; Hiroyuki Kumeta; Kenji Ogura; Masaaki Ashida; Fuyuhiko Inagaki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-26       Impact factor: 11.205

6.  Crystallization and preliminary X-ray diffraction studies of the family 54 carbohydrate-binding module from laminarinase (β-1,3-glucanase) Lic16A of Clostridium thermocellum.

Authors:  Yury A Kislitsyn; Valeriya R Samygina; Igor A Dvortsov; Nataliya A Lunina; Inna P Kuranova; Galina A Velikodvorskaya
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-28       Impact factor: 1.056

7.  NMR and MD investigations of human galectin-1/oligosaccharide complexes.

Authors:  Christophe Meynier; Mikael Feracci; Marion Espeli; Florence Chaspoul; Philippe Gallice; Claudine Schiff; Françoise Guerlesquin; Philippe Roche
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

8.  A Novel Carbohydrate-binding Module from Sugar Cane Soil Metagenome Featuring Unique Structural and Carbohydrate Affinity Properties.

Authors:  Bruna Medeia Campos; Marcelo Vizona Liberato; Thabata Maria Alvarez; Letícia Maria Zanphorlin; Gabriela Cristina Ematsu; Hernane Barud; Igor Polikarpov; Roberto Ruller; Harry J Gilbert; Ana Carolina de Mattos Zeri; Fabio Marcio Squina
Journal:  J Biol Chem       Date:  2016-09-12       Impact factor: 5.157

9.  Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.

Authors:  Andrew P Yeh; Polat Abdubek; Tamara Astakhova; Herbert L Axelrod; Constantina Bakolitsa; Xiaohui Cai; Dennis Carlton; Connie Chen; Hsiu Ju Chiu; Michelle Chiu; Thomas Clayton; Debanu Das; Marc C Deller; Lian Duan; Kyle Ellrott; Carol L Farr; Julie Feuerhelm; Joanna C Grant; Anna Grzechnik; Gye Won Han; Lukasz Jaroszewski; Kevin K Jin; Heath E Klock; Mark W Knuth; Piotr Kozbial; S Sri Krishna; Abhinav Kumar; Winnie W Lam; David Marciano; Daniel McMullan; Mitchell D Miller; Andrew T Morse; Edward Nigoghossian; Amanda Nopakun; Linda Okach; Christina Puckett; Ron Reyes; Henry J Tien; Christine B Trame; Henry van den Bedem; Dana Weekes; Tiffany Wooten; Qingping Xu; Keith O Hodgson; John Wooley; Marc André Elsliger; Ashley M Deacon; Adam Godzik; Scott A Lesley; Ian A Wilson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-04

10.  The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains.

Authors:  Robson F De Souza; Lakshminarayan M Iyer; L Aravind
Journal:  Biol Direct       Date:  2009-08-14       Impact factor: 4.540

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