Literature DB >> 17121881

Mapping geographic zones of cancer risk with epigenetic biomarkers in normal breast tissue.

Pearlly S Yan1, Chinnambally Venkataramu, Ashraf Ibrahim, Joseph C Liu, Rulong Z Shen, Nils M Diaz, Barbara Centeno, Frank Weber, Yu-Wei Leu, Charles L Shapiro, Charis Eng, Timothy J Yeatman, Tim H-M Huang.   

Abstract

PURPOSE: Genetic alterations were previously identified in normal epithelia adjacent to invasive cancers. The aim of this study was to determine DNA methylation in histologically normal tissues from multiple geographic zones adjacent to primary breast tumors. EXPERIMENTAL
DESIGN: First, methylation status of a 4-kb region of RASSF1A promoter was interrogated using oligonucleotide-based microarray in 144 samples (primary tumors, 47; adjacent normals, 69; reduction mammoplasty tissues, 28). Second, allelic imbalance (AI)/loss of heterozygosity (LOH) surrounding RASSF1A promoter were analyzed in 30 samples (tumors, 8; adjacent normals, 22). Third, global methylation screening of 49 samples (tumors, 12; adjacent normals, 25; reduction mammoplasty, 12) was done by differential methylation hybridization. Real-time quantitative methylation-specific PCR was used to validate the microarray findings.
RESULTS: DNA methylation in the core RASSF1A promoter was low in reduction mammoplasty tissues (P=0.0001) when compared with primary tumors. The adjacent normals had an intermediate level of methylation. The regions surrounding the core were highly methylated in all sample types. Microsatellite markers showed AI/LOH in tumors and some of the adjacent normals. Concurrent AI/LOH and DNA methylation in RASSF1A promoter occurred in two of six tumors. Global methylation screening uncovered genes more methylated in adjacent normals than in reduction mammoplasty tissues. The methylation status of four genes was confirmed by quantitative methylation-specific PCR.
CONCLUSIONS: Our findings suggest a field of methylation changes extending as far as 4 cm from primary tumors. These frequent alterations may explain why normal tissues are at risk for local recurrence and are useful in disease prognostication.

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Year:  2006        PMID: 17121881     DOI: 10.1158/1078-0432.CCR-06-0467

Source DB:  PubMed          Journal:  Clin Cancer Res        ISSN: 1078-0432            Impact factor:   12.531


  88 in total

Review 1.  Epigenetic alterations in the breast: Implications for breast cancer detection, prognosis and treatment.

Authors:  Amy M Dworkin; Tim H-M Huang; Amanda Ewart Toland
Journal:  Semin Cancer Biol       Date:  2009-02-20       Impact factor: 15.707

2.  Analysis of DNA methylation of multiple genes in microdissected cells from formalin-fixed and paraffin-embedded tissues.

Authors:  Dimo Dietrich; Ralf Lesche; Reimo Tetzner; Manuel Krispin; Jörn Dietrich; Wolfgang Haedicke; Matthias Schuster; Glen Kristiansen
Journal:  J Histochem Cytochem       Date:  2009-01-19       Impact factor: 2.479

3.  Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma.

Authors:  Gurkan Bebek; Mohammed Orloff; Charis Eng
Journal:  J Clin Bioinforma       Date:  2011-08-02

4.  DNA methylation: a marker for carcinogen exposure and cancer risk.

Authors:  Takeshi Nakajima; Shotaro Enomoto; Toshikazu Ushijima
Journal:  Environ Health Prev Med       Date:  2007-12-11       Impact factor: 3.674

5.  Methylation of polycomb target genes in intestinal cancer is mediated by inflammation.

Authors:  Maria A Hahn; Torsten Hahn; Dong-Hyun Lee; R Steven Esworthy; Byung-Wook Kim; Arthur D Riggs; Fong-Fong Chu; Gerd P Pfeifer
Journal:  Cancer Res       Date:  2008-12-15       Impact factor: 12.701

6.  The value of diffusion-weighted imaging in assessing the ADC changes of tissues adjacent to breast carcinoma.

Authors:  Zhang Yili; Huang Xiaoyan; Du Hongwen; Zhang Yun; Chen Xin; Wang Peng; Guo Youmin
Journal:  BMC Cancer       Date:  2009-01-14       Impact factor: 4.430

Review 7.  DNA methylation of cancer genome.

Authors:  Hoi-Hung Cheung; Tin-Lap Lee; Owen M Rennert; Wai-Yee Chan
Journal:  Birth Defects Res C Embryo Today       Date:  2009-12

8.  Quantitative methylation profiling in tumor and matched morphologically normal tissues from breast cancer patients.

Authors:  Ilse Van der Auwera; Catherine Bovie; Cecilia Svensson; Xuan B Trinh; Ridha Limame; Peter van Dam; Steven J van Laere; Eric A van Marck; Luc Y Dirix; Peter B Vermeulen
Journal:  BMC Cancer       Date:  2010-03-12       Impact factor: 4.430

9.  Methylation of homeobox genes is a frequent and early epigenetic event in breast cancer.

Authors:  Stella Tommasi; Deborah L Karm; Xiwei Wu; Yun Yen; Gerd P Pfeifer
Journal:  Breast Cancer Res       Date:  2009-02-27       Impact factor: 6.466

10.  Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection?

Authors:  Yasser Riazalhosseini; Jörg D Hoheisel
Journal:  Genome Biol       Date:  2008-11-26       Impact factor: 13.583

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