| Literature DB >> 17118151 |
Tomasz G Smolinski1, Roger Buchanan, Grzegorz M Boratyn, Mariofanna Milanova, Astrid A Prinz.
Abstract
BACKGROUND: Independent Component Analysis (ICA) proves to be useful in the analysis of neural activity, as it allows for identification of distinct sources of activity. Applied to measurements registered in a controlled setting and under exposure to an external stimulus, it can facilitate analysis of the impact of the stimulus on those sources. The link between the stimulus and a given source can be verified by a classifier that is able to "predict" the condition a given signal was registered under, solely based on the components. However, the ICA's assumption about statistical independence of sources is often unrealistic and turns out to be insufficient to build an accurate classifier. Therefore, we propose to utilize a novel method, based on hybridization of ICA, multi-objective evolutionary algorithms (MOEA), and rough sets (RS), that attempts to improve the effectiveness of signal decomposition techniques by providing them with "classification-awareness."Entities:
Mesh:
Year: 2006 PMID: 17118151 PMCID: PMC1683557 DOI: 10.1186/1471-2105-7-S2-S8
Source DB: PubMed Journal: BMC Bioinformatics ISSN: 1471-2105 Impact factor: 3.169
Figure 1Signal decomposition for classification – original dataset (source: [2])
Figure 2Signal decomposition for classification – generated basis functions (source: [2])
Figure 3Signal decomposition for classification – coefficients for representation of the original signal in new attribute space (source: [2])
Figure 4Chromosome coding
Figure 5Input EPs for the unexposed (a) and exposed (b) animal
Figure 619 independent components computed using ICA
Comparison of the reconstruction errors. The error is calculated using the signal energy-based measure introduced in (5) for all 19 ICA's components (ICA), 5 classificatory decomposition components determined by the algorithm as important for classification and at the same time "improved" for reconstruction (CD 5), and the prototypical 5 components (determined by similarities in shape) taken directly from ICA without an "improvement" (ICA 5).
| Signal no. | ICA | CD 5 | ICA 5 |
| 1 | 3.28E-14 | 0.6835 | 1.2386 |
| 2 | 0.00E+00 | 0.6839 | 1.3235 |
| 3 | 1.17E-03 | 0.9051 | 1.3046 |
| 4 | 4.93E-03 | 0.4079 | 2.1672 |
| 5 | 1.14E-03 | 0.7817 | 1.1331 |
| 6 | 2.61E-03 | 0.3956 | 0.8999 |
| 7 | 2.55E-03 | 0.4523 | 1.0975 |
| 8 | 1.42E-03 | 0.4390 | 0.8135 |
| 9 | 3.64E-03 | 0.2983 | 1.3739 |
| 10 | 2.50E-04 | 0.4254 | 1.2926 |
| 11 | 3.74E-03 | 0.5594 | 2.0227 |
| 12 | 1.07E-03 | 0.6931 | 1.7776 |
| 13 | 1.04E-02 | 0.7806 | 1.8558 |
| 14 | 6.75E-03 | 0.7468 | 4.3669 |
| 15 | 1.29E-02 | 0.9559 | 1.0434 |
| 16 | 1.54E-03 | 0.7442 | 1.1452 |
| 17 | 9.60E-04 | 0.8155 | 1.2484 |
| 18 | 4.28E-04 | 0.4873 | 1.4637 |
| 19 | 1.78E-04 | 0.3161 | 0.6808 |
| Average | 5.37E-14 | 0.6090 | 1.4868 |
Comparison of the generalization errors. The mean generalization errors (E) are computed for the vectors of coefficients found by the presented classificatory decomposition method (CD) and ICA. The P-value represents the significance level of the fact that the presented method produces components that are more convenient for classification (P-value ≤ 0.05 implies statistical significance). The errors were averaged over 10 trials for each CD method.
| Method | ||
| CD with max. no. of basis functions = 5 | 1.2817 | < 0.0001 |
| CD with max. no. of basis functions = 10 | 0.5605 | < 0.0001 |
| CD with max. no. of basis functions = 19 | 2.3545 | 1.0000 |
| ICA | 1.4186 |
Figure 7Selected averaged components for the unexposed (a) and exposed (b) animal