Literature DB >> 17105187

The latent promiscuity of newly identified microbial lactonases is linked to a recently diverged phosphotriesterase.

Livnat Afriat1, Cintia Roodveldt, Giuseppe Manco, Dan S Tawfik.   

Abstract

In essence, evolutionary processes occur gradually, while maintaining fitness throughout. Along this line, it has been proposed that the ability of a progenitor to promiscuously catalyze a low level of the evolving activity could facilitate the divergence of a new function by providing an immediate selective advantage. To directly establish a role for promiscuity in the divergence of natural enzymes, we attempted to trace the origins of a bacterial phosphotriesterase (PTE), an enzyme thought to have evolved for the purpose of degradation of a synthetic insecticide introduced in the 20th century. We surmised that PTE's promiscuous lactonase activity may be a vestige of its progenitor and tested homologues annotated as "putative PTEs" for lactonase and phosphotriesterase activity. We identified three genes that define a new group of microbial lactonases dubbed PTE-like lactonases (PLLs). These enzymes proficiently hydrolyze various lactones, and in particular quorum-sensing N-acyl homoserine lactones (AHLs), and exhibit much lower promiscuous phosphotriesterase activities. PLLs share key sequence and active site features with PTE and differ primarily by an insertion in one surface loop. Given their biochemical and biological function, PLLs are likely to have existed for many millions of years. PTE could have therefore evolved from a member of the PLL family while utilizing its latent promiscuous paraoxonase activity as an essential starting point.

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Year:  2006        PMID: 17105187     DOI: 10.1021/bi061268r

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  94 in total

Review 1.  Divergence and convergence in enzyme evolution: parallel evolution of paraoxonases from quorum-quenching lactonases.

Authors:  Mikael Elias; Dan S Tawfik
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

2.  Determination of whether quorum quenching is a common activity in marine bacteria by analysis of cultivable bacteria and metagenomic sequences.

Authors:  Manuel Romero; Ana-Belen Martin-Cuadrado; Ana Otero
Journal:  Appl Environ Microbiol       Date:  2012-06-15       Impact factor: 4.792

Review 3.  Mutational effects and the evolution of new protein functions.

Authors:  Misha Soskine; Dan S Tawfik
Journal:  Nat Rev Genet       Date:  2010-08       Impact factor: 53.242

4.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

5.  Function discovery and structural characterization of a methylphosphonate esterase.

Authors:  Dao Feng Xiang; Yury Patskovsky; Venkatesh V Nemmara; Rafael Toro; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2015-04-28       Impact factor: 3.162

6.  Characterization of a phosphotriesterase-like lactonase from Sulfolobus solfataricus and its immobilization for disruption of quorum sensing.

Authors:  Filomena S W Ng; Daniel M Wright; Stephen Y K Seah
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

7.  Structure-based function discovery of an enzyme for the hydrolysis of phosphorylated sugar lactones.

Authors:  Dao Feng Xiang; Peter Kolb; Alexander A Fedorov; Chengfu Xu; Elena V Fedorov; Tamari Narindoshivili; Howard J Williams; Brian K Shoichet; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2012-02-15       Impact factor: 3.162

Review 8.  Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities.

Authors:  Carol A Bonner; Terrence Disz; Kaitlyn Hwang; Jian Song; Veronika Vonstein; Ross Overbeek; Roy A Jensen
Journal:  Microbiol Mol Biol Rev       Date:  2008-03       Impact factor: 11.056

9.  Latent evolutionary potentials under the neutral mutational drift of an enzyme.

Authors:  Gil Amitai; Rinkoo Devi Gupta; Dan S Tawfik
Journal:  HFSP J       Date:  2007-05-21

10.  Substrate Profile of the Phosphotriesterase Homology Protein from Escherichia coli.

Authors:  Venkatesh V Nemmara; Dao Feng Xiang; A A Fedorov; E V Fedorov; Jeffrey B Bonanno; Steven C Almo; Frank M Raushel
Journal:  Biochemistry       Date:  2018-10-16       Impact factor: 3.162

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