Literature DB >> 1710340

2'-O-methyl, 2'-O-ethyl oligoribonucleotides and phosphorothioate oligodeoxyribonucleotides as inhibitors of the in vitro U7 snRNP-dependent mRNA processing event.

M Cotten1, B Oberhauser, H Brunar, A Holzner, G Issakides, C R Noe, G Schaffner, E Wagner, M L Birnstiel.   

Abstract

We describe the synthesis of 2'-O-methyl, 2'-O-ethyl oligoribonucleotides and phosphorothioate oligodeoxyribonucleotides and demonstrate their utility as inhibitors of the in vitro U7 snRNP-dependent mRNA processing event. These 2'-O-modified compounds were designed to possess the binding affinity of an RNA molecule towards a complementary RNA target with an enhanced stability against nucleases. The 2'-O-methyl and 2'-O-ethyl antisense compounds function as potent inhibitors of the reaction at 1-10 nM, approximately 5-fold more effective than a natural antisense RNA molecule and requiring an approximate 5-fold excess over the target RNA for 80% inhibition of the processing reaction.

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Year:  1991        PMID: 1710340      PMCID: PMC328180          DOI: 10.1093/nar/19.10.2629

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

1.  Antisense RNA injections in fertilized frog eggs reveal an RNA duplex unwinding activity.

Authors:  M R Rebagliati; D A Melton
Journal:  Cell       Date:  1987-02-27       Impact factor: 41.582

2.  Sequence-dependent hydrolysis of RNA using modified oligonucleotide splints and RNase H.

Authors:  H Inoue; Y Hayase; S Iwai; E Ohtsuka
Journal:  FEBS Lett       Date:  1987-05-11       Impact factor: 4.124

3.  Site-directed cleavage of RNA.

Authors:  S Shibahara; S Mukai; T Nishihara; H Inoue; E Ohtsuka; H Morisawa
Journal:  Nucleic Acids Res       Date:  1987-06-11       Impact factor: 16.971

Review 4.  Transcription termination and 3' processing: the end is in site!

Authors:  M L Birnstiel; M Busslinger; K Strub
Journal:  Cell       Date:  1985-06       Impact factor: 41.582

5.  Compensatory mutations suggest that base-pairing with a small nuclear RNA is required to form the 3' end of H3 messenger RNA.

Authors:  F Schaufele; G M Gilmartin; W Bannwarth; M L Birnstiel
Journal:  Nature       Date:  1986 Oct 30-Nov 5       Impact factor: 49.962

Review 6.  Oligonucleotide analogues as potential chemotherapeutic agents.

Authors:  G Zon
Journal:  Pharm Res       Date:  1988-09       Impact factor: 4.200

7.  Antisense probing of the human U4/U6 snRNP with biotinylated 2'-OMe RNA oligonucleotides.

Authors:  B J Blencowe; B S Sproat; U Ryder; S Barabino; A I Lamond
Journal:  Cell       Date:  1989-11-03       Impact factor: 41.582

8.  Ribozyme, antisense RNA, and antisense DNA inhibition of U7 small nuclear ribonucleoprotein-mediated histone pre-mRNA processing in vitro.

Authors:  M Cotten; G Schaffner; M L Birnstiel
Journal:  Mol Cell Biol       Date:  1989-10       Impact factor: 4.272

9.  Generation of histone mRNA 3' ends by endonucleolytic cleavage of the pre-mRNA in a snRNP-dependent in vitro reaction.

Authors:  O Gick; A Krämer; W Keller; M L Birnstiel
Journal:  EMBO J       Date:  1986-06       Impact factor: 11.598

10.  Mapping U2 snRNP--pre-mRNA interactions using biotinylated oligonucleotides made of 2'-OMe RNA.

Authors:  S M Barabino; B S Sproat; U Ryder; B J Blencowe; A I Lamond
Journal:  EMBO J       Date:  1989-12-20       Impact factor: 11.598

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  20 in total

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Authors:  Zbigniew Dominski; William F Marzluff
Journal:  Gene       Date:  2007-05-04       Impact factor: 3.688

3.  Two-step affinity purification of U7 small nuclear ribonucleoprotein particles using complementary biotinylated 2'-O-methyl oligoribonucleotides.

Authors:  H O Smith; K Tabiti; G Schaffner; D Soldati; U Albrecht; M L Birnstiel
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

4.  A simple procedure for the preparation of protected 2'-O-methyl or 2'-O-ethyl ribonucleoside-3'-O-phosphoramidites.

Authors:  E Wagner; B Oberhauser; A Holzner; H Brunar; G Issakides; G Schaffner; M Cotten; M Knollmüller; C R Noe
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

5.  Visualizing the dynamics of viral replication in living cells via Tat peptide delivery of nuclease-resistant molecular beacons.

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6.  Shedding light on virus replication.

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7.  3' Processing and termination of mouse histone transcripts synthesized in vitro by RNA polymerase II.

Authors:  X Gu; W F Marzluff
Journal:  Nucleic Acids Res       Date:  1996-10-01       Impact factor: 16.971

8.  Studies of the 5' exonuclease and endonuclease activities of CPSF-73 in histone pre-mRNA processing.

Authors:  Xiao-cui Yang; Kelly D Sullivan; William F Marzluff; Zbigniew Dominski
Journal:  Mol Cell Biol       Date:  2008-10-27       Impact factor: 4.272

9.  Hepatitis C virus RNA quantitation in venous and capillary small-volume whole-blood samples.

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Journal:  J Clin Microbiol       Date:  2009-08-19       Impact factor: 5.948

10.  Intracellular disposition and metabolism of fluorescently-labeled unmodified and modified oligonucleotides microinjected into mammalian cells.

Authors:  T L Fisher; T Terhorst; X Cao; R W Wagner
Journal:  Nucleic Acids Res       Date:  1993-08-11       Impact factor: 16.971

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