Literature DB >> 17103088

Genetic diversity of SIRE-1 retroelements in annual and perennial Glycine species revealed using SSAP.

Catherine Chesnay1, Amar Kumar, Stephen R Pearce.   

Abstract

Sequence Specific Amplification Polymorphisms (SSAP) were used to measure the distribution and structure of SIRE-1 retroelement populations in annual and perennial Glycine species. For SSAP analysis, primers corresponding to a region immediately upstream of the 3'LTR of the soybean retroelement SIRE-1 were chosen. Analysis reveals that SIRE-1 is present throughout the Glycine genus and shows that the annual species have similar SIRE-1 populations whilst the perennial species have much more distinct and diverse populations. The high number of species-specific subgroups suggest that SIRE-1 has been active and evolving independently in each species during the course of Glycine evolution.

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Year:  2006        PMID： 17103088      PMCID： PMC6275780          DOI： 10.2478/s11658-006-0054-y

Source DB:  PubMed          Journal:  Cell Mol Biol Lett        ISSN： 1425-8153            Impact factor:   5.787


  10 in total

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Authors:  S R Pearce; C Stuart-Rogers; M R Knox; A Kumar; T H Ellis; A J Flavell
Journal:  Plant J       Date:  1999-09       Impact factor: 6.417

Review 2.  Retroviruses in plants?

Authors:  B D Peterson-Burch; D A Wright; H M Laten; D F Voytas
Journal:  Trends Genet       Date:  2000-04       Impact factor: 11.639

3.  Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum.

Authors:  S R Pearce; M Knox; T H Ellis; A J Flavell; A Kumar
Journal:  Mol Gen Genet       Date:  2000-07

4.  Phylogenetic evidence for Ty1-copia-like endogenous retroviruses in plant genomes.

Authors:  H M Laten
Journal:  Genetica       Date:  1999       Impact factor: 1.082

5.  PowerMarker: an integrated analysis environment for genetic marker analysis.

Authors:  Kejun Liu; Spencer V Muse
Journal:  Bioinformatics       Date:  2005-02-10       Impact factor: 6.937

6.  Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR.

Authors:  Sheh May Tam; Corinne Mhiri; Aat Vogelaar; Marcel Kerkveld; Stephen R Pearce; Marie-Angèle Grandbastien
Journal:  Theor Appl Genet       Date:  2005-02-08       Impact factor: 5.699

7.  Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP).

Authors:  R Waugh; K McLean; A J Flavell; S R Pearce; A Kumar; B B Thomas; W Powell
Journal:  Mol Gen Genet       Date:  1997-02-27

8.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

9.  Phylogeny and transpositional activity of Ty1-copia group retrotransposons in cereal genomes.

Authors:  B M Gribbon; S R Pearce; R Kalendar; A H Schulman; L Paulin; P Jack; A Kumar; A J Flavell
Journal:  Mol Gen Genet       Date:  1999-07

10.  SIRE1, an endogenous retrovirus family from Glycine max, is highly homogeneous and evolutionarily young.

Authors:  Howard M Laten; Ericka R Havecker; Lisa M Farmer; Daniel F Voytas
Journal:  Mol Biol Evol       Date:  2003-05-30       Impact factor: 16.240
  10 in total
  3 in total

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Authors:  Sungyul Chang; Glen L Hartman; Ram J Singh; Kris N Lambert; Houston A Hobbs; Leslie L Domier
Journal:  Theor Appl Genet       Date:  2013-03-15       Impact factor: 5.699

2.  Isolation, characterization, and marker utility of KCRE1, a transcriptionally active Ty1/copia retrotransposon from Kandelia candel.

Authors:  Wenwen Liu; Yushuai Wang; Xu Shen; Tian Tang
Journal:  Mol Genet Genomics       Date:  2016-08-04       Impact factor: 3.291

3.  MASiVEdb: the Sirevirus Plant Retrotransposon Database.

Authors:  Alexandros Bousios; Evangelia Minga; Nikoleta Kalitsou; Maria Pantermali; Aphrodite Tsaballa; Nikos Darzentas
Journal:  BMC Genomics       Date:  2012-04-30       Impact factor: 3.969
  3 in total

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