Literature DB >> 10571856

Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies.

S R Pearce1, C Stuart-Rogers, M R Knox, A Kumar, T H Ellis, A J Flavell.   

Abstract

The terminal sequences of long-terminal repeat (LTR) retrotransposons are a source of powerful molecular markers for linkage mapping and biodiversity studies. The major factor limiting the widespread application of LTR retrotransposon-based molecular markers is the availability of new retrotransposon terminal sequences. We describe a PCR-based method for the rapid isolation of LTR sequences of Ty1-copia group retrotransposons from the genomic DNA of potentially any higher plant species. To demonstrate the utility of this technique, we have identified a variety of new retrotransposon LTR sequences from pea, broad bean and Norway spruce. Primers specific for three pea LTRs have been used to reveal polymorphisms associated with the corresponding retrotransposons within the Pisum genus.

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Year:  1999        PMID: 10571856     DOI: 10.1046/j.1365-313x.1999.00556.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  27 in total

Review 1.  Analysis of plant diversity with retrotransposon-based molecular markers.

Authors:  R Kalendar; A J Flavell; T H N Ellis; T Sjakste; C Moisy; A H Schulman
Journal:  Heredity (Edinb)       Date:  2010-08-04       Impact factor: 3.821

2.  Identification of the blast resistance gene Pit in rice cultivars using functional markers.

Authors:  K Hayashi; N Yasuda; Y Fujita; S Koizumi; H Yoshida
Journal:  Theor Appl Genet       Date:  2010-06-30       Impact factor: 5.699

3.  iPBS: a universal method for DNA fingerprinting and retrotransposon isolation.

Authors:  Ruslan Kalendar; Kristiina Antonius; Petr Smýkal; Alan H Schulman
Journal:  Theor Appl Genet       Date:  2010-07-10       Impact factor: 5.699

4.  The diversity of retroelements in diploid and allotetraploid Brassica species.

Authors:  Karine Alix; J S Pat Heslop-Harrison
Journal:  Plant Mol Biol       Date:  2004-04       Impact factor: 4.076

5.  Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR.

Authors:  Sheh May Tam; Corinne Mhiri; Aat Vogelaar; Marcel Kerkveld; Stephen R Pearce; Marie-Angèle Grandbastien
Journal:  Theor Appl Genet       Date:  2005-02-08       Impact factor: 5.699

6.  Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers.

Authors:  Alberto Martín Sanz; Susana Gilsanz Gonzalez; Naeem Hasan Syed; Maria Jose Suso; Constantino Caminero Saldaña; Andrew J Flavell
Journal:  Mol Genet Genomics       Date:  2007-06-19       Impact factor: 3.291

7.  Genetic and epigenetic instability of amplification-prone sequences of a novel B chromosome induced by tissue culture in Plantago lagopus L.

Authors:  Gurmeet Kour; Balbir Kour; Sanjana Kaul; Manoj Kumar Dhar
Journal:  Plant Cell Rep       Date:  2009-10-22       Impact factor: 4.570

8.  A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers.

Authors:  Naeem H Syed; Anker P Sørensen; Rudie Antonise; Clemens van de Wiel; C Gerard van der Linden; Wendy van 't Westende; Danny A P Hooftman; Hans C M den Nijs; Andrew J Flavell
Journal:  Theor Appl Genet       Date:  2005-12-10       Impact factor: 5.699

9.  Isolation of Ty1-copia retrotransposon in myrtle genome and development of S-SAP molecular marker.

Authors:  Pasqualina Woodrow; Giovanni Pontecorvo; Loredana F Ciarmiello
Journal:  Mol Biol Rep       Date:  2011-07-02       Impact factor: 2.316

10.  Retrotransposable Elements: DNA Fingerprinting and the Assessment of Genetic Diversity.

Authors:  Ruslan Kalendar; Alexander Muterko; Svetlana Boronnikova
Journal:  Methods Mol Biol       Date:  2021
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