Literature DB >> 17101787

In Trypanosoma brucei RNA editing, TbMP18 (band VII) is critical for editosome integrity and for both insertional and deletional cleavages.

Julie A Law1, Sean O'Hearn, Barbara Sollner-Webb.   

Abstract

In trypanosome RNA editing, uridylate (U) residues are inserted and deleted at numerous sites within mitochondrial pre-mRNAs by an approximately 20S protein complex that catalyzes cycles of cleavage, U addition/U removal, and ligation. We used RNA interference to deplete TbMP18 (band VII), the last unexamined major protein of our purified editing complex, showing it is essential. TbMP18 is critical for the U-deletional and U-insertional cleavages and for integrity of the approximately 20S editing complex, whose other major components, TbMP99, TbMP81, TbMP63, TbMP52, TbMP48, TbMP42 (bands I through VI), and TbMP57, instead sediment as approximately 10S associations. Additionally, TbMP18 augments editing substrate recognition by the TbMP57 terminal U transferase, possibly aiding the recognition component, TbMP81. The other editing activities and their coordination in precleaved editing remain active in the absence of TbMP18. These data are reminiscent of the data on editing subcomplexes reported by A. Schnaufer et al. (Mol. Cell 12:307-319, 2003) and suggest that these subcomplexes are held together in the approximately 20S complex by TbMP18, as was proposed previously. Our data additionally imply that the proteins are less long-lived in these subcomplexes than they are when held in the complete editing complex. The editing endonucleolytic cleavages being lost when the editing complex becomes fragmented, as upon TbMP18 depletion, should be advantageous to the trypanosome, minimizing broken mRNAs.

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Year:  2006        PMID: 17101787      PMCID: PMC1800803          DOI: 10.1128/MCB.01460-06

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  57 in total

1.  Uridylate addition and RNA ligation contribute to the specificity of kinetoplastid insertion RNA editing.

Authors:  R P Igo; S S Palazzo; M L Burgess; A K Panigrahi; K Stuart
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

2.  Trypanosoma brucei RNA editing complex: band II is structurally critical and maintains band V ligase, which is nonessential.

Authors:  Sean F O'Hearn; Catherine E Huang; Mike Hemann; Alevtina Zhelonkina; Barbara Sollner-Webb
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

3.  TbMP57 is a 3' terminal uridylyl transferase (TUTase) of the Trypanosoma brucei editosome.

Authors:  Nancy Lewis Ernst; Brian Panicucci; Robert P Igo; Aswini K Panigrahi; Reza Salavati; Kenneth Stuart
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

4.  A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information.

Authors:  B Blum; N Bakalara; L Simpson
Journal:  Cell       Date:  1990-01-26       Impact factor: 41.582

5.  Addition of uridines to edited RNAs in trypanosome mitochondria occurs independently of transcription.

Authors:  M E Harris; D R Moore; S L Hajduk
Journal:  J Biol Chem       Date:  1990-07-05       Impact factor: 5.157

6.  RNA editing involves indiscriminate U changes throughout precisely defined editing domains.

Authors:  C J Decker; B Sollner-Webb
Journal:  Cell       Date:  1990-06-15       Impact factor: 41.582

7.  Partially edited mRNAs for cytochrome b and subunit III of cytochrome oxidase from Leishmania tarentolae mitochondria: RNA editing intermediates.

Authors:  N R Sturm; L Simpson
Journal:  Cell       Date:  1990-06-01       Impact factor: 41.582

8.  The Leishmania kinetoplast-mitochondrion contains terminal uridylyltransferase and RNA ligase activities.

Authors:  N Bakalara; A M Simpson; L Simpson
Journal:  J Biol Chem       Date:  1989-11-05       Impact factor: 5.157

9.  Inhibition of Trypanosoma brucei gene expression by RNA interference using an integratable vector with opposing T7 promoters.

Authors:  Z Wang; J C Morris; M E Drew; P T Englund
Journal:  J Biol Chem       Date:  2000-12-22       Impact factor: 5.157

10.  Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei.

Authors:  J E Feagin; J M Abraham; K Stuart
Journal:  Cell       Date:  1988-05-06       Impact factor: 41.582

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  16 in total

1.  KREPA6 is an RNA-binding protein essential for editosome integrity and survival of Trypanosoma brucei.

Authors:  Salvador Zipagan Tarun; Achim Schnaufer; Nancy Lewis Ernst; Rosemary Proff; Junpeng Deng; Wim Hol; Kenneth Stuart
Journal:  RNA       Date:  2007-12-07       Impact factor: 4.942

2.  A protein-protein interaction map of trypanosome ~20S editosomes.

Authors:  Achim Schnaufer; Meiting Wu; Young-jun Park; Tadashi Nakai; Junpeng Deng; Rose Proff; Wim G J Hol; Kenneth D Stuart
Journal:  J Biol Chem       Date:  2009-12-14       Impact factor: 5.157

3.  The KREPA3 zinc finger motifs and OB-fold domain are essential for RNA editing and survival of Trypanosoma brucei.

Authors:  Xuemin Guo; Nancy Lewis Ernst; Kenneth D Stuart
Journal:  Mol Cell Biol       Date:  2008-09-15       Impact factor: 4.272

4.  Trypanosoma brucei RNA editing protein TbMP42 (band VI) is crucial for the endonucleolytic cleavages but not the subsequent steps of U-deletion and U-insertion.

Authors:  Julie A Law; Sean F O'Hearn; Barbara Sollner-Webb
Journal:  RNA       Date:  2008-04-25       Impact factor: 4.942

5.  The Architecture of Trypanosoma brucei editosomes.

Authors:  Suzanne M McDermott; Jie Luo; Jason Carnes; Jeff A Ranish; Kenneth Stuart
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-05       Impact factor: 11.205

Review 6.  Uridine insertion/deletion editing in trypanosomes: a playground for RNA-guided information transfer.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-03-23       Impact factor: 9.957

7.  Guide RNA-binding complex from mitochondria of trypanosomatids.

Authors:  James Weng; Inna Aphasizheva; Ronald D Etheridge; Lan Huang; Xiaorong Wang; Arnold M Falick; Ruslan Aphasizhev
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

8.  Explorations of linked editosome domains leading to the discovery of motifs defining conserved pockets in editosome OB-folds.

Authors:  Young-Jun Park; Wim G J Hol
Journal:  J Struct Biol       Date:  2012-08-10       Impact factor: 2.867

9.  The zinc-fingers of KREPA3 are essential for the complete editing of mitochondrial mRNAs in Trypanosoma brucei.

Authors:  Xuemin Guo; Nancy Lewis Ernst; Jason Carnes; Kenneth D Stuart
Journal:  PLoS One       Date:  2010-01-27       Impact factor: 3.240

10.  Guide to the nomenclature of kinetoplastid RNA editing: a proposal.

Authors:  Larry Simpson; Ruslan Aphasizhev; Julius Lukes; Jorge Cruz-Reyes
Journal:  Protist       Date:  2009-11-27
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