Literature DB >> 17097187

Quantification of insect genome divergence.

Evgeny M Zdobnov1, Peer Bork.   

Abstract

The recent sequencing of twelve insect genomes has enabled us to quantify their divergence using synteny conservation and sequence identity of single-copy orthologs. Protein identity correlates well with synteny and is about three times more conserved, an observation consistent with comparisons among vertebrates. The observed distribution of the lengths of synteny blocks follows a power law and differs from the expectations of the currently accepted random breakage model. Our results show that there is only limited selection for conservation of gene order and reveal a few hundred genes, proximity among which seems to be vital.

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Year:  2006        PMID: 17097187     DOI: 10.1016/j.tig.2006.10.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  72 in total

1.  Trends in prokaryotic evolution revealed by comparison of closely related bacterial and archaeal genomes.

Authors:  Pavel S Novichkov; Yuri I Wolf; Inna Dubchak; Eugene V Koonin
Journal:  J Bacteriol       Date:  2008-10-31       Impact factor: 3.490

2.  Conserved cluster organization of insect Runx genes.

Authors:  Riyue Bao; Markus Friedrich
Journal:  Dev Genes Evol       Date:  2008-08-29       Impact factor: 0.900

3.  Development of Tribolium castaneum.

Authors:  Siegfried Roth; Volker Hartenstein
Journal:  Dev Genes Evol       Date:  2008-04       Impact factor: 0.900

4.  Computational methods for Gene Orthology inference.

Authors:  David M Kristensen; Yuri I Wolf; Arcady R Mushegian; Eugene V Koonin
Journal:  Brief Bioinform       Date:  2011-06-19       Impact factor: 11.622

5.  Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.

Authors:  Michael R Kanost; Estela L Arrese; Xiaolong Cao; Yun-Ru Chen; Sanjay Chellapilla; Marian R Goldsmith; Ewald Grosse-Wilde; David G Heckel; Nicolae Herndon; Haobo Jiang; Alexie Papanicolaou; Jiaxin Qu; Jose L Soulages; Heiko Vogel; James Walters; Robert M Waterhouse; Seung-Joon Ahn; Francisca C Almeida; Chunju An; Peshtewani Aqrawi; Anne Bretschneider; William B Bryant; Sascha Bucks; Hsu Chao; Germain Chevignon; Jayne M Christen; David F Clarke; Neal T Dittmer; Laura C F Ferguson; Spyridoula Garavelou; Karl H J Gordon; Ramesh T Gunaratna; Yi Han; Frank Hauser; Yan He; Hanna Heidel-Fischer; Ariana Hirsh; Yingxia Hu; Hongbo Jiang; Divya Kalra; Christian Klinner; Christopher König; Christie Kovar; Ashley R Kroll; Suyog S Kuwar; Sandy L Lee; Rüdiger Lehman; Kai Li; Zhaofei Li; Hanquan Liang; Shanna Lovelace; Zhiqiang Lu; Jennifer H Mansfield; Kyle J McCulloch; Tittu Mathew; Brian Morton; Donna M Muzny; David Neunemann; Fiona Ongeri; Yannick Pauchet; Ling-Ling Pu; Ioannis Pyrousis; Xiang-Jun Rao; Amanda Redding; Charles Roesel; Alejandro Sanchez-Gracia; Sarah Schaack; Aditi Shukla; Guillaume Tetreau; Yang Wang; Guang-Hua Xiong; Walther Traut; Tom K Walsh; Kim C Worley; Di Wu; Wenbi Wu; Yuan-Qing Wu; Xiufeng Zhang; Zhen Zou; Hannah Zucker; Adriana D Briscoe; Thorsten Burmester; Rollie J Clem; René Feyereisen; Cornelis J P Grimmelikhuijzen; Stavros J Hamodrakas; Bill S Hansson; Elisabeth Huguet; Lars S Jermiin; Que Lan; Herman K Lehman; Marce Lorenzen; Hans Merzendorfer; Ioannis Michalopoulos; David B Morton; Subbaratnam Muthukrishnan; John G Oakeshott; Will Palmer; Yoonseong Park; A Lorena Passarelli; Julio Rozas; Lawrence M Schwartz; Wendy Smith; Agnes Southgate; Andreas Vilcinskas; Richard Vogt; Ping Wang; John Werren; Xiao-Qiang Yu; Jing-Jiang Zhou; Susan J Brown; Steven E Scherer; Stephen Richards; Gary W Blissard
Journal:  Insect Biochem Mol Biol       Date:  2016-08-12       Impact factor: 4.714

6.  Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

Authors:  Pär G Engström; Shannan J Ho Sui; Oyvind Drivenes; Thomas S Becker; Boris Lenhard
Journal:  Genome Res       Date:  2007-11-07       Impact factor: 9.043

7.  The myofibrillar protein, projectin, is highly conserved across insect evolution except for its PEVK domain.

Authors:  Agnes J Ayme-Southgate; Richard J Southgate; Richard A Philipp; Erik E Sotka; Catherine Kramp
Journal:  J Mol Evol       Date:  2008-12       Impact factor: 2.395

8.  Extensive conserved synteny of genes between the karyotypes of Manduca sexta and Bombyx mori revealed by BAC-FISH mapping.

Authors:  Yuji Yasukochi; Makiko Tanaka-Okuyama; Fukashi Shibata; Atsuo Yoshido; Frantisek Marec; Chengcang Wu; Hongbin Zhang; Marian R Goldsmith; Ken Sahara
Journal:  PLoS One       Date:  2009-10-15       Impact factor: 3.240

9.  Single-copy nuclear genes resolve the phylogeny of the holometabolous insects.

Authors:  Brian M Wiegmann; Michelle D Trautwein; Jung-Wook Kim; Brian K Cassel; Matthew A Bertone; Shaun L Winterton; David K Yeates
Journal:  BMC Biol       Date:  2009-06-24       Impact factor: 7.431

10.  Linking fold, function and phylogeny: a comparative genomics view on protein (domain) evolution.

Authors:  Aartjan J W Te Velthuis; Christoph P Bagowski
Journal:  Curr Genomics       Date:  2008-04       Impact factor: 2.236

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