Literature DB >> 17097086

Damage detection by the UvrABC pathway: crystal structure of UvrB bound to fluorescein-adducted DNA.

Timothy R Waters1, Jitka Eryilmaz, Stella Geddes, Tracey E Barrett.   

Abstract

UvrB is the damage recognition element of the highly conserved UvrABC pathway that functions in the removal of bulky DNA adducts. Pivotal to this is the formation of a damage detection complex that relies on the ability of UvrB to locate and sequester diverse lesions. Whilst structures of UvrB bound to DNA have recently been reported, none address the issue of lesion recognition. Here, we describe the crystal structure of UvrB bound to a pentanucleotide containing a single fluorescein-adducted thymine that reveals a unique mechanism for damage detection entirely dependent on the exclusion of lesions larger than an undamaged nucleotide.

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Year:  2006        PMID: 17097086     DOI: 10.1016/j.febslet.2006.10.051

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  15 in total

1.  Structure and mechanism of the UvrA-UvrB DNA damage sensor.

Authors:  Danaya Pakotiprapha; Martin Samuels; Koning Shen; Johnny H Hu; David Jeruzalmi
Journal:  Nat Struct Mol Biol       Date:  2012-02-05       Impact factor: 15.369

2.  Crystal structure of Bacillus stearothermophilus UvrA provides insight into ATP-modulated dimerization, UvrB interaction, and DNA binding.

Authors:  Danaya Pakotiprapha; Yoshihiko Inuzuka; Brian R Bowman; Geri F Moolenaar; Nora Goosen; David Jeruzalmi; Gregory L Verdine
Journal:  Mol Cell       Date:  2007-12-27       Impact factor: 17.970

Review 3.  Surviving the sun: repair and bypass of DNA UV lesions.

Authors:  Wei Yang
Journal:  Protein Sci       Date:  2011-11       Impact factor: 6.725

4.  The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair.

Authors:  Brandon C Case; Silas Hartley; Memie Osuga; David Jeruzalmi; Manju M Hingorani
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

Review 5.  Mechanistic and biological aspects of helicase action on damaged DNA.

Authors:  Avvaru N Suhasini; Robert M Brosh
Journal:  Cell Cycle       Date:  2010-06-15       Impact factor: 4.534

6.  Human Suv3 protein reveals unique features among SF2 helicases.

Authors:  Robert Jedrzejczak; Jiawei Wang; Miroslawa Dauter; Roman J Szczesny; Piotr P Stepien; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-10-19

7.  Collaborative dynamic DNA scanning by nucleotide excision repair proteins investigated by single- molecule imaging of quantum-dot-labeled proteins.

Authors:  Neil M Kad; Hong Wang; Guy G Kennedy; David M Warshaw; Bennett Van Houten
Journal:  Mol Cell       Date:  2010-03-12       Impact factor: 17.970

Review 8.  Prokaryotic nucleotide excision repair.

Authors:  Caroline Kisker; Jochen Kuper; Bennett Van Houten
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

9.  Ribonucleotides as nucleotide excision repair substrates.

Authors:  Yuqin Cai; Nicholas E Geacintov; Suse Broyde
Journal:  DNA Repair (Amst)       Date:  2013-11-26

10.  Exploring damage recognition models in prokaryotic nucleotide excision repair with a benzo[a]pyrene-derived lesion in UvrB.

Authors:  Lei Jia; Konstantin Kropachev; Shuang Ding; Bennett Van Houten; Nicholas E Geacintov; Suse Broyde
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

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