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Literature DB >> 23457260

Prokaryotic nucleotide excision repair.

Caroline Kisker¹, Jochen Kuper, Bennett Van Houten.

Abstract

Nucleotide excision repair (NER) has allowed bacteria to flourish in many different niches around the globe that inflict harsh environmental damage to their genetic material. NER is remarkable because of its diverse substrate repertoire, which differs greatly in chemical composition and structure. Recent advances in structural biology and single-molecule studies have given great insight into the structure and function of NER components. This ensemble of proteins orchestrates faithful removal of toxic DNA lesions through a multistep process. The damaged nucleotide is recognized by dynamic probing of the DNA structure that is then verified and marked for dual incisions followed by excision of the damage and surrounding nucleotides. The opposite DNA strand serves as a template for repair, which is completed after resynthesis and ligation.

Entities: Chemical Disease Gene Species

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Year: 2013 PMID： 23457260 PMCID： PMC3578354 DOI： 10.1101/cshperspect.a012591

Source DB: PubMed Journal: Cold Spring Harb Perspect Biol ISSN： 1943-0264 Impact factor: 10.005

114 in total

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Journal: Mol Cell Date: 2001-01 Impact factor: 17.970

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Journal: Proc Natl Acad Sci U S A Date: 1964-02 Impact factor: 11.205

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Authors: Nora Assenmacher; Katja Wenig; Alfred Lammens; Karl-Peter Hopfner
Journal: J Mol Biol Date: 2005-11-08 Impact factor: 5.469

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Authors: James J Truglio; Benjamin Rhau; Deborah L Croteau; Liqun Wang; Milan Skorvaga; Erkan Karakas; Matthew J DellaVecchia; Hong Wang; Bennett Van Houten; Caroline Kisker
Journal: EMBO J Date: 2005-02-03 Impact factor: 11.598

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Journal: Proc Natl Acad Sci U S A Date: 1990-08 Impact factor: 11.205

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Journal: Nucleic Acids Res Date: 1999-03-01 Impact factor: 16.971

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Authors: B Van Houten; A Snowden
Journal: Bioessays Date: 1993-01 Impact factor: 4.345

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Authors: Milan Skorvaga; Matthew J DellaVecchia; Deborah L Croteau; Karsten Theis; James J Truglio; Bhaskar S Mandavilli; Caroline Kisker; Bennett Van Houten
Journal: J Biol Chem Date: 2004-09-28 Impact factor: 5.157

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Authors: Abigail J Smith; Mark D Szczelkun; Nigel J Savery
Journal: Nucleic Acids Res Date: 2007-02-28 Impact factor: 16.971

70 in total

1. Redox Chemistry in the Genome: Emergence of the [4Fe4S] Cofactor in Repair and Replication.

Authors: Jacqueline K Barton; Rebekah M B Silva; Elizabeth O'Brien
Journal: Annu Rev Biochem Date: 2019-06-20 Impact factor: 23.643

Review 2. Nucleotide excision repair in eukaryotes.

Authors: Orlando D Schärer
Journal: Cold Spring Harb Perspect Biol Date: 2013-10-01 Impact factor: 10.005

3. Reprograming the Replisome of a Semisynthetic Organism for the Expansion of the Genetic Alphabet.

Authors: Michael P Ledbetter; Rebekah J Karadeema; Floyd E Romesberg
Journal: J Am Chem Soc Date: 2018-01-08 Impact factor: 15.419

4. The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair.

Authors: Brandon C Case; Silas Hartley; Memie Osuga; David Jeruzalmi; Manju M Hingorani
Journal: Nucleic Acids Res Date: 2019-05-07 Impact factor: 16.971

5. Understanding bias in DNA repair.

Authors: Terence R Strick; Nigel J Savery
Journal: Proc Natl Acad Sci U S A Date: 2017-03-06 Impact factor: 11.205

Review 6. From Mfd to TRCF and Back Again-A Perspective on Bacterial Transcription-coupled Nucleotide Excision Repair.

Authors: Alexandra M Deaconescu; Margaret M Suhanovsky
Journal: Photochem Photobiol Date: 2016-12-27 Impact factor: 3.421

7. Role of DNA Repair and Protective Components in Bacillus subtilis Spore Resistance to Inactivation by 400-nm-Wavelength Blue Light.

Authors: Bahar Djouiai; Joanne E Thwaite; Thomas R Laws; Fabian M Commichau; Barbara Setlow; Peter Setlow; Ralf Moeller
Journal: Appl Environ Microbiol Date: 2018-09-17 Impact factor: 4.792