Literature DB >> 17090676

Bacterial metapopulations in nanofabricated landscapes.

Juan E Keymer1, Peter Galajda, Cecilia Muldoon, Sungsu Park, Robert H Austin.   

Abstract

We have constructed a linear array of coupled, microscale patches of habitat. When bacteria are inoculated into this habitat landscape, a metapopulation emerges. Local bacterial populations in each patch coexist and weakly couple with neighbor populations in nearby patches. These spatially distributed bacterial populations interact through local extinction and colonization processes. We have further built heterogeneous habitat landscapes to study the adaptive dynamics of the bacterial metapopulations. By patterning habitat differences across the landscape, our device physically implements an adaptive landscape. In landscapes with higher niche diversity, we observe rapid adaptation to large-scale, low-quality (high-stress) areas. Our results illustrate the potential lying at the interface between nanoscale biophysics and landscape evolutionary ecology.

Mesh:

Year:  2006        PMID: 17090676      PMCID: PMC1635019          DOI: 10.1073/pnas.0607971103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

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Authors:  Sungsu Park; Peter M Wolanin; Emil A Yuzbashyan; Hai Lin; Nicholas C Darnton; Jeffry B Stock; Pascal Silberzan; Robert Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-17       Impact factor: 11.205

2.  Bacterial communication: tiny teamwork.

Authors:  E Peter Greenberg
Journal:  Nature       Date:  2003-07-10       Impact factor: 49.962

3.  Motion to form a quorum.

Authors:  Sungsu Park; Peter M Wolanin; Emil A Yuzbashyan; Pascal Silberzan; Jeffry B Stock; Robert H Austin
Journal:  Science       Date:  2003-07-11       Impact factor: 47.728

4.  Complex patterns formed by motile cells of Escherichia coli.

Authors:  E O Budrene; H C Berg
Journal:  Nature       Date:  1991-02-14       Impact factor: 49.962

5.  Long-term monitoring of bacteria undergoing programmed population control in a microchemostat.

Authors:  Frederick K Balagaddé; Lingchong You; Carl L Hansen; Frances H Arnold; Stephen R Quake
Journal:  Science       Date:  2005-07-01       Impact factor: 47.728

6.  A microfluidic chemostat for experiments with bacterial and yeast cells.

Authors:  Alex Groisman; Caroline Lobo; HoJung Cho; J Kyle Campbell; Yann S Dufour; Ann M Stevens; Andre Levchenko
Journal:  Nat Methods       Date:  2005-09       Impact factor: 28.547

7.  Description of the chemostat.

Authors:  A NOVICK; L SZILARD
Journal:  Science       Date:  1950-12-15       Impact factor: 47.728

8.  Microbial competition: Escherichia coli mutants that take over stationary phase cultures.

Authors:  M M Zambrano; D A Siegele; M Almirón; A Tormo; R Kolter
Journal:  Science       Date:  1993-03-19       Impact factor: 47.728

9.  Initiation of slime mold aggregation viewed as an instability.

Authors:  E F Keller; L A Segel
Journal:  J Theor Biol       Date:  1970-03       Impact factor: 2.691

10.  Stress-induced mutagenesis in bacteria.

Authors:  Ivana Bjedov; Olivier Tenaillon; Bénédicte Gérard; Valeria Souza; Erick Denamur; Miroslav Radman; François Taddei; Ivan Matic
Journal:  Science       Date:  2003-05-30       Impact factor: 47.728

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  58 in total

1.  Growth propagation of yeast in linear arrays of microfluidic chambers over many generations.

Authors:  Li Wang; Jiaji Liu; Xin Li; Jian Shi; Jie Hu; Ran Cui; Zhi-Ling Zhang; Dai-Wen Pang; Yong Chen
Journal:  Biomicrofluidics       Date:  2011-12-16       Impact factor: 2.800

2.  Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions.

Authors:  Peter G Shankles; Andrea C Timm; Mitchel J Doktycz; Scott T Retterer
Journal:  J Vac Sci Technol B Nanotechnol Microelectron       Date:  2015-10-21

Review 3.  Can we build synthetic, multicellular systems by controlling developmental signaling in space and time?

Authors:  Rustem F Ismagilov; Michel M Maharbiz
Journal:  Curr Opin Chem Biol       Date:  2007-11-19       Impact factor: 8.822

4.  A wall of funnels concentrates swimming bacteria.

Authors:  Peter Galajda; Juan Keymer; Paul Chaikin; Robert Austin
Journal:  J Bacteriol       Date:  2007-09-21       Impact factor: 3.490

5.  Using chemistry and microfluidics to understand the spatial dynamics of complex biological networks.

Authors:  Christian J Kastrup; Matthew K Runyon; Elena M Lucchetta; Jessica M Price; Rustem F Ismagilov
Journal:  Acc Chem Res       Date:  2008-01-25       Impact factor: 22.384

6.  Computation of mutual fitness by competing bacteria.

Authors:  Juan E Keymer; Peter Galajda; Guillaume Lambert; David Liao; Robert H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-11       Impact factor: 11.205

7.  Electron microscopy of whole cells in liquid with nanometer resolution.

Authors:  N de Jonge; D B Peckys; G J Kremers; D W Piston
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

8.  Defined spatial structure stabilizes a synthetic multispecies bacterial community.

Authors:  Hyun Jung Kim; James Q Boedicker; Jang Wook Choi; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-14       Impact factor: 11.205

Review 9.  Microfluidics expanding the frontiers of microbial ecology.

Authors:  Roberto Rusconi; Melissa Garren; Roman Stocker
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

Review 10.  Bacteria and game theory: the rise and fall of cooperation in spatially heterogeneous environments.

Authors:  Guillaume Lambert; Saurabh Vyawahare; Robert H Austin
Journal:  Interface Focus       Date:  2014-08-06       Impact factor: 3.906

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