Literature DB >> 17088552

A methyldiazene (HN=N-CH3)-derived species bound to the nitrogenase active-site FeMo cofactor: Implications for mechanism.

Brett M Barney1, Dmitriy Lukoyanov, Tran-Chin Yang, Dennis R Dean, Brian M Hoffman, Lance C Seefeldt.   

Abstract

Methyldiazene (HN=N-CH3) isotopomers labeled with 15N at the terminal or internal nitrogens or with 13C or 2H were used as substrates for the nitrogenase alpha-195Gln-substituted MoFe protein. Freeze quenching under turnover traps an S = (1/2) state that has been characterized by EPR and 1H-, 15N-, and 13C-electron nuclear double resonance spectroscopies. These studies disclosed the following: (i) a methyldiazene-derived species is bound to the active-site FeMo cofactor; (ii) this species binds through an [-NHx] fragment whose N derives from the methyldiazene terminal N; and (iii) the internal N from methyldiazene probably does not bind to FeMo cofactor. These results constrain possible mechanisms for reduction of methyldiazene. In the Chatt-Schrock mechanism for N2 reduction, H atoms sequentially add to the distal N before N-N bond cleavage (d-mechanism). In a d-mechanism for methyldiazene reduction, a bound [-NHx] fragment only occurs after reduction by three electrons, which leads to N-N bond cleavage and the release of the first NH3. Thus, the appearance of bound [-NHx] is compatible with the d-mechanism only if it represents a late stage in the reduction process. In contrast are mechanisms where H atoms add alternately to distal and proximal nitrogens before N-N cleavage (a-mechanism) and release of the first NH3 after reduction by five electrons. An [-NHx] fragment would be bound at every stage of methyldiazene reduction in an a-mechanism. Although current information does not rule out the d-mechanism, the a-mechanism is more attractive because proton delivery to substrate has been specifically compromised in alpha-195Gln-substituted MoFe protein.

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Year:  2006        PMID: 17088552      PMCID: PMC1693872          DOI: 10.1073/pnas.0602130103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  New insights into structure-function relationships in nitrogenase: A 1.6 A resolution X-ray crystallographic study of Klebsiella pneumoniae MoFe-protein.

Authors:  S M Mayer; D M Lawson; C A Gormal; S M Roe; B E Smith
Journal:  J Mol Biol       Date:  1999-10-01       Impact factor: 5.469

2.  Nitrogenase reduction of carbon disulfide: freeze-quench EPR and ENDOR evidence for three sequential intermediates with cluster-bound carbon moieties.

Authors:  M J Ryle; H I Lee; L C Seefeldt; B M Hoffman
Journal:  Biochemistry       Date:  2000-02-08       Impact factor: 3.162

3.  Nitrogenase MoFe-protein at 1.16 A resolution: a central ligand in the FeMo-cofactor.

Authors:  Oliver Einsle; F Akif Tezcan; Susana L A Andrade; Benedikt Schmid; Mika Yoshida; James B Howard; Douglas C Rees
Journal:  Science       Date:  2002-09-06       Impact factor: 47.728

4.  Trapping H- bound to the nitrogenase FeMo-cofactor active site during H2 evolution: characterization by ENDOR spectroscopy.

Authors:  Robert Y Igarashi; Mikhail Laryukhin; Patricia C Dos Santos; Hong-In Lee; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-05-04       Impact factor: 15.419

5.  Electron inventory, kinetic assignment (E(n)), structure, and bonding of nitrogenase turnover intermediates with C2H2 and CO.

Authors:  Hong-In Lee; Morten Sørlie; Jason Christiansen; Tran-Chin Yang; Junlong Shao; Dennis R Dean; Brian J Hales; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2005-11-16       Impact factor: 15.419

6.  Trapping a hydrazine reduction intermediate on the nitrogenase active site.

Authors:  Brett M Barney; Mikhail Laryukhin; Robert Y Igarashi; Hong-In Lee; Patricia C Dos Santos; Tran-Chin Yang; Brian M Hoffman; Dennis R Dean; Lance C Seefeldt
Journal:  Biochemistry       Date:  2005-06-07       Impact factor: 3.162

Review 7.  Nitrogenase: standing at the crossroads.

Authors:  D C Rees; J B Howard
Journal:  Curr Opin Chem Biol       Date:  2000-10       Impact factor: 8.822

8.  Substrate interaction at an iron-sulfur face of the FeMo-cofactor during nitrogenase catalysis.

Authors:  Brett M Barney; Robert Y Igarashi; Patricia C Dos Santos; Dennis R Dean; Lance C Seefeldt
Journal:  J Biol Chem       Date:  2004-10-01       Impact factor: 5.157

9.  Isolation of an iron-molybdenum cofactor from nitrogenase.

Authors:  V K Shah; W J Brill
Journal:  Proc Natl Acad Sci U S A       Date:  1977-08       Impact factor: 11.205

10.  Chemical activity of the nitrogenase FeMo cofactor with a central nitrogen ligand: density functional study.

Authors:  Berit Hinnemann; Jens K Nørskov
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

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  25 in total

Review 1.  Catalytic N2-to-NH3 (or -N2H4) Conversion by Well-Defined Molecular Coordination Complexes.

Authors:  Matthew J Chalkley; Marcus W Drover; Jonas C Peters
Journal:  Chem Rev       Date:  2020-04-30       Impact factor: 60.622

2.  Photolysis of Hi-CO Nitrogenase - Observation of a Plethora of Distinct CO Species using Infrared Spectroscopy.

Authors:  Lifen Yan; Christie H Dapper; Simon J George; Hongxin Wang; Devrani Mitra; Weibing Dong; William E Newton; Stephen P Cramer
Journal:  Eur J Inorg Chem       Date:  2011-03-28       Impact factor: 2.524

3.  57Fe ENDOR spectroscopy and 'electron inventory' analysis of the nitrogenase E4 intermediate suggest the metal-ion core of FeMo-cofactor cycles through only one redox couple.

Authors:  Peter E Doan; Joshua Telser; Brett M Barney; Robert Y Igarashi; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

Review 4.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

Review 5.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

6.  ENDOR/HYSCORE studies of the common intermediate trapped during nitrogenase reduction of N2H2, CH3N2H, and N2H4 support an alternating reaction pathway for N2 reduction.

Authors:  Dmitriy Lukoyanov; Sergei A Dikanov; Zhi-Yong Yang; Brett M Barney; Rimma I Samoilova; Kuppala V Narasimhulu; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2011-07-11       Impact factor: 15.419

7.  Triggering N(2) uptake via redox-induced expulsion of coordinated NH(3) and N(2) silylation at trigonal bipyramidal iron.

Authors:  Yunho Lee; Neal P Mankad; Jonas C Peters
Journal:  Nat Chem       Date:  2010-05-16       Impact factor: 24.427

Review 8.  Nitrogenase reduction of carbon-containing compounds.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Simon Duval; Dennis R Dean
Journal:  Biochim Biophys Acta       Date:  2013-04-16

9.  A substrate channel in the nitrogenase MoFe protein.

Authors:  Brett M Barney; Michael G Yurth; Patricia C Dos Santos; Dennis R Dean; Lance C Seefeldt
Journal:  J Biol Inorg Chem       Date:  2009-05-21       Impact factor: 3.358

10.  The reactivity patterns of low-coordinate iron-hydride complexes.

Authors:  Ying Yu; Azwana R Sadique; Jeremy M Smith; Thomas R Dugan; Ryan E Cowley; William W Brennessel; Christine J Flaschenriem; Eckhard Bill; Thomas R Cundari; Patrick L Holland
Journal:  J Am Chem Soc       Date:  2008-04-30       Impact factor: 15.419

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