Literature DB >> 17083961

Synthesis with good enantiomeric excess of both enantiomers of alpha-ketols and acetolactates by two thiamin diphosphate-dependent decarboxylases.

Ahmet Baykal1, Sumit Chakraborty, Afua Dodoo, Frank Jordan.   

Abstract

In addition to the decarboxylation of 2-oxo acids, thiamin diphosphate (ThDP)-dependent decarboxylases/dehydrogenases can also carry out so-called carboligation reactions, where the central ThDP-bound enamine intermediate reacts with electrophilic substrates. For example, the enzyme yeast pyruvate decarboxylase (YPDC, from Saccharomyces cerevisiae) or the E1 subunit of the Escherichia coli pyruvate dehydrogenase complex (PDHc-E1) can produce acetoin and acetolactate, resulting from the reaction of the central thiamin diphosphate-bound enamine with acetaldehyde and pyruvate, respectively. Earlier, we had shown that some active center variants indeed prefer such a carboligase pathway to the usual one [Sergienko, Jordan, Biochemistry 40 (2001) 7369-7381; Nemeria et al., J. Biol. Chem. 280 (2005) 21,473-21,482]. Herein is reported detailed analysis of the stereoselectivity for forming the carboligase products acetoin, acetolactate, and phenylacetylcarbinol by the E477Q and D28A YPDC, and the E636A and E636Q PDHc-E1 active-center variants. Both pyruvate and beta-hydroxypyruvate were used as substrates and the enantiomeric excess was analyzed by a combination of NMR, circular dichroism and chiral-column gas chromatographic methods. Remarkably, the two enzymes produced a high enantiomeric excess of the opposite enantiomer of both acetoin-derived and acetolactate-derived products, strongly suggesting that the facial selectivity for the electrophile in the carboligation is different in the two enzymes. The different stereoselectivities exhibited by the two enzymes could be utilized in the chiral synthesis of important intermediates.

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Year:  2006        PMID: 17083961      PMCID: PMC1702321          DOI: 10.1016/j.bioorg.2006.09.006

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  16 in total

Review 1.  Enzymatic asymmetric synthesis by decarboxylases.

Authors:  O P Ward; A Singh
Journal:  Curr Opin Biotechnol       Date:  2000-12       Impact factor: 9.740

Review 2.  Current mechanistic understanding of thiamin diphosphate-dependent enzymatic reactions.

Authors:  Frank Jordan
Journal:  Nat Prod Rep       Date:  2003-04       Impact factor: 13.423

3.  Spectroscopic evidence for participation of the 1',4'-imino tautomer of thiamin diphosphate in catalysis by yeast pyruvate decarboxylase.

Authors:  Frank Jordan; Zhen Zhang; Eduard Sergienko
Journal:  Bioorg Chem       Date:  2002-06       Impact factor: 5.275

4.  Catalytic acid-base groups in yeast pyruvate decarboxylase. 2. Insights into the specific roles of D28 and E477 from the rates and stereospecificity of formation of carboligase side products.

Authors:  E A Sergienko; F Jordan
Journal:  Biochemistry       Date:  2001-06-26       Impact factor: 3.162

5.  Catalytic acid-base groups in yeast pyruvate decarboxylase. 3. A steady-state kinetic model consistent with the behavior of both wild-type and variant enzymes at all relevant pH values.

Authors:  E A Sergienko; F Jordan
Journal:  Biochemistry       Date:  2001-06-26       Impact factor: 3.162

6.  Electronic and nuclear magnetic resonance spectroscopic features of the 1',4'-iminopyrimidine tautomeric form of thiamin diphosphate, a novel intermediate on enzymes requiring this coenzyme.

Authors:  Ahmet T Baykal; Lazaros Kakalis; Frank Jordan
Journal:  Biochemistry       Date:  2006-06-20       Impact factor: 3.162

7.  Snapshot of a key intermediate in enzymatic thiamin catalysis: crystal structure of the alpha-carbanion of (alpha,beta-dihydroxyethyl)-thiamin diphosphate in the active site of transketolase from Saccharomyces cerevisiae.

Authors:  Erik Fiedler; Stina Thorell; Tatyana Sandalova; Ralph Golbik; Stephan König; Gunter Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

8.  Dual catalytic apparatus of the thiamin diphosphate coenzyme: acid-base via the 1',4'-iminopyrimidine tautomer along with its electrophilic role.

Authors:  Frank Jordan; Natalia S Nemeria; Sheng Zhang; Yan Yan; Palaniappa Arjunan; William Furey
Journal:  J Am Chem Soc       Date:  2003-10-22       Impact factor: 15.419

Review 9.  A new perspective on thiamine catalysis.

Authors:  Martina Pohl; Georg A Sprenger; Michael Müller
Journal:  Curr Opin Biotechnol       Date:  2004-08       Impact factor: 9.740

10.  Tetrahedral intermediates in thiamin diphosphate-dependent decarboxylations exist as a 1',4'-imino tautomeric form of the coenzyme, unlike the michaelis complex or the free coenzyme.

Authors:  Natalia Nemeria; Ahmet Baykal; Ebenezer Joseph; Sheng Zhang; Yan Yan; William Furey; Frank Jordan
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

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  7 in total

1.  Enantioselective intermolecular aldehyde-ketone cross-coupling through an enzymatic carboligation reaction.

Authors:  Patrizia Lehwald; Michael Richter; Caroline Röhr; Hung-wen Liu; Michael Müller
Journal:  Angew Chem Int Ed Engl       Date:  2010-03-22       Impact factor: 15.336

2.  Probing the active center of benzaldehyde lyase with substitutions and the pseudosubstrate analogue benzoylphosphonic acid methyl ester.

Authors:  Gabriel S Brandt; Natalia Nemeria; Sumit Chakraborty; Michael J McLeish; Alejandra Yep; George L Kenyon; Gregory A Petsko; Frank Jordan; Dagmar Ringe
Journal:  Biochemistry       Date:  2008-06-21       Impact factor: 3.162

3.  Snapshot of a reaction intermediate: analysis of benzoylformate decarboxylase in complex with a benzoylphosphonate inhibitor.

Authors:  Gabriel S Brandt; Malea M Kneen; Sumit Chakraborty; Ahmet T Baykal; Natalia Nemeria; Alejandra Yep; David I Ruby; Gregory A Petsko; George L Kenyon; Michael J McLeish; Frank Jordan; Dagmar Ringe
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

4.  Influence of allosteric regulators on individual steps in the reaction catalyzed by Mycobacterium tuberculosis 2-hydroxy-3-oxoadipate synthase.

Authors:  Anand Balakrishnan; Frank Jordan; Carl F Nathan
Journal:  J Biol Chem       Date:  2013-06-11       Impact factor: 5.157

5.  Investigation of the donor and acceptor range for chiral carboligation catalyzed by the E1 component of the 2-oxoglutarate dehydrogenase complex.

Authors:  Hetalben Patel; Da Jeong Shim; Edgardo T Farinas; Frank Jordan
Journal:  J Mol Catal B Enzym       Date:  2013-12-30

6.  Cyperane and eudesmane-type sesquiterpenoids from Chinese liverwort and their anti-diabetic nephropathy potential.

Authors:  Jiaozhen Zhang; Yongjie Wang; Rongxiu Zhu; Yi Li; Yuelan Li; Yanan Qiao; Jinchuan Zhou; Hongxiang Lou
Journal:  RSC Adv       Date:  2018-11-22       Impact factor: 3.361

7.  Functional Versatility of the Human 2-Oxoadipate Dehydrogenase in the L-Lysine Degradation Pathway toward Its Non-Cognate Substrate 2-Oxopimelic Acid.

Authors:  Natalia S Nemeria; Balint Nagy; Roberto Sanchez; Xu Zhang; João Leandro; Attila Ambrus; Sander M Houten; Frank Jordan
Journal:  Int J Mol Sci       Date:  2022-07-26       Impact factor: 6.208

  7 in total

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