Literature DB >> 17081052

Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics.

Kim K Hixson1, Joshua N Adkins, Scott E Baker, Ronald J Moore, Brett A Chromy, Richard D Smith, Sandra L McCutchen-Maloney, Mary S Lipton.   

Abstract

The accurate mass and time tag mass spectrometry method and clustering analysis were used to compare the abundance change of 992 Yersinia pestis proteins under four contrasting growth conditions (26 and 37 degrees C, with or without Ca2+) that mimicked growth states in either a flea vector or mammalian host. Eighty-nine proteins were observed to have similar abundance change profiles to 29 known virulence associated proteins, providing identification of additional biomarker candidates. Eighty-seven hypothetical proteins, which clustered into 5 distinct clusters of like-protein abundance change, were identified as unique biomarkers related specifically to growth condition.

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Year:  2006        PMID: 17081052     DOI: 10.1021/pr060179y

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  18 in total

Review 1.  Nooks and crannies in type VI secretion regulation.

Authors:  Christophe S Bernard; Yannick R Brunet; Erwan Gueguen; Eric Cascales
Journal:  J Bacteriol       Date:  2010-05-28       Impact factor: 3.490

Review 2.  Protein abundance ratios for global studies of prokaryotes.

Authors:  Qiangwei Xia; Erik L Hendrickson; Tiansong Wang; Richard J Lamont; John A Leigh; Murray Hackett
Journal:  Proteomics       Date:  2007-08       Impact factor: 3.984

3.  Optimization of proteomic sample preparation procedures for comprehensive protein characterization of pathogenic systems.

Authors:  Heather M Mottaz-Brewer; Angela D Norbeck; Joshua N Adkins; Nathan P Manes; Charles Ansong; Liang Shi; Yasuko Rikihisa; Takane Kikuchi; Scott W Wong; Ryan D Estep; Fred Heffron; Ljiljana Pasa-Tolic; Richard D Smith
Journal:  J Biomol Tech       Date:  2008-12

4.  AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins.

Authors:  Myriam Ferro; Sabine Brugière; Daniel Salvi; Daphné Seigneurin-Berny; Magali Court; Lucas Moyet; Claire Ramus; Stéphane Miras; Mourad Mellal; Sophie Le Gall; Sylvie Kieffer-Jaquinod; Christophe Bruley; Jérôme Garin; Jacques Joyard; Christophe Masselon; Norbert Rolland
Journal:  Mol Cell Proteomics       Date:  2010-01-10       Impact factor: 5.911

5.  On the benefits of acquiring peptide fragment ions at high measured mass accuracy.

Authors:  Alexander Scherl; Scott A Shaffer; Gregory K Taylor; Patricia Hernandez; Ron D Appel; Pierre-Alain Binz; David R Goodlett
Journal:  J Am Soc Mass Spectrom       Date:  2008-03-04       Impact factor: 3.109

6.  Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.

Authors:  Nitin Gupta; Kim K Hixson; David E Culley; Richard D Smith; Pavel A Pevzner
Journal:  Proteomics       Date:  2010-08       Impact factor: 3.984

7.  Proteomics: technology development and applications.

Authors:  S Patrick Walton; Arul Jayaraman
Journal:  Expert Rev Proteomics       Date:  2009-02       Impact factor: 3.940

8.  Proteomic analysis of iron acquisition, metabolic and regulatory responses of Yersinia pestis to iron starvation.

Authors:  Rembert Pieper; Shih-Ting Huang; Prashanth P Parmar; David J Clark; Hamid Alami; Robert D Fleischmann; Robert D Perry; Scott N Peterson
Journal:  BMC Microbiol       Date:  2010-01-29       Impact factor: 3.605

9.  Evaluation of a Yersinia pestis mutant impaired in a thermoregulated type VI-like secretion system in flea, macrophage and murine models.

Authors:  Jennilee B Robinson; Maxim V Telepnev; Irina V Zudina; Donald Bouyer; John A Montenieri; Scott W Bearden; Kenneth L Gage; Stacy L Agar; Sheri M Foltz; Sadhana Chauhan; Ashok K Chopra; Vladimir L Motin
Journal:  Microb Pathog       Date:  2009-08-27       Impact factor: 3.738

10.  Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes.

Authors:  Rembert Pieper; Shih-Ting Huang; David J Clark; Jeffrey M Robinson; Hamid Alami; Prashanth P Parmar; Moo-Jin Suh; Srilatha Kuntumalla; Christine L Bunai; Robert D Perry; Robert D Fleischmann; Scott N Peterson
Journal:  Proteome Sci       Date:  2009-02-19       Impact factor: 2.480

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