Literature DB >> 17069978

What common structural features and variations of mammalian P450s are known to date?

Michal Otyepka1, Josef Skopalík, Eva Anzenbacherová, Pavel Anzenbacher.   

Abstract

Sufficient structural information on mammalian cytochromes P450 has now been published (including seventeen X-ray structures of these enzymes by June 2006) to allow characteristic features of these enzymes to be identified, including: (i) the presence of a common fold, typical of all P450s, (ii) similarities in the positioning of the heme cofactor, (iii) the spatial arrangement of certain structural elements, and (iv) the access/egress paths for substrates and products, (v) probably common orientation in the membrane, (vi) characteristic properties of the active sites with networks of water molecules, (vii) mode of interaction with redox partners and (viii) a certain degree of flexibility of the structure and active site determining the ease with which the enzyme may bind the substrates. As well as facilitating the identification of common features, comparison of the available structures allows differences among the structures to be identified, including variations in: (i) preferred access/egress paths to/from the active site, (ii) the active site volume and (iii) flexible regions. The availability of crystal structures provides opportunities for molecular dynamic simulations, providing data that are apparently complementary to experimental findings but also allow the dynamic behavior of access/egress paths and other dynamic features of the enzymes to be explored.

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Year:  2006        PMID: 17069978     DOI: 10.1016/j.bbagen.2006.09.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  41 in total

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Review 3.  Substrate binding to cytochromes P450.

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4.  Effects of tetracycline on developmental toxicity and molecular responses in zebrafish (Danio rerio) embryos.

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Journal:  Ecotoxicology       Date:  2015-01-15       Impact factor: 2.823

5.  Site of metabolism prediction on cytochrome P450 2C9: a knowledge-based docking approach.

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6.  Structural differences between soluble and membrane bound cytochrome P450s.

Authors:  I G Denisov; A Y Shih; S G Sligar
Journal:  J Inorg Biochem       Date:  2011-12-14       Impact factor: 4.155

7.  Structures of cytochrome P450 2B4 complexed with the antiplatelet drugs ticlopidine and clopidogrel .

Authors:  Sean C Gay; Arthur G Roberts; Keiko Maekawa; Jyothi C Talakad; Wen-Xu Hong; Qinghai Zhang; C David Stout; James R Halpert
Journal:  Biochemistry       Date:  2010-09-15       Impact factor: 3.162

8.  Crystal structures of cytochrome P450 2B4 in complex with the inhibitor 1-biphenyl-4-methyl-1H-imidazole: ligand-induced structural response through alpha-helical repositioning.

Authors:  Sean C Gay; Ling Sun; Keiko Maekawa; James R Halpert; C David Stout
Journal:  Biochemistry       Date:  2009-06-09       Impact factor: 3.162

9.  High-affinity binding of [3H]cimetidine to a heme-containing protein in rat brain.

Authors:  Rebecca Stadel; Jun Yang; Julia W Nalwalk; James G Phillips; Lindsay B Hough
Journal:  Drug Metab Dispos       Date:  2007-12-19       Impact factor: 3.922

10.  Structures of prostacyclin synthase and its complexes with substrate analog and inhibitor reveal a ligand-specific heme conformation change.

Authors:  Yi-Ching Li; Chia-Wang Chiang; Hui-Chun Yeh; Pei-Yung Hsu; Frank G Whitby; Lee-Ho Wang; Nei-Li Chan
Journal:  J Biol Chem       Date:  2007-11-21       Impact factor: 5.157

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