Literature DB >> 1706952

Monte Carlo simulation of the water in a channel with charges.

M E Green1, J Lewis.   

Abstract

A Monte Carlo simulation of water in a channel with charges suggests the existence of water in immobile, high density, essentially glasslike form near the charges. The channel model has a conical section with an opening through which water molecules can pass, at the narrow end of the cone, and a cylindrical section at the other end. When the charges are placed near the narrow section of the model, the "glass" effectively blocks the channel; with the charges removed, the channel opens. The effect can be determined from the rate of passage of the water molecules through the pore, from the average orientation of the water molecule, and from distortion of the distribution of molecules. In the simulations carried out to date, no external ions have been considered. In addition to the energy, the Helmholtz free energy has been calculated.

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Year:  1991        PMID: 1706952      PMCID: PMC1281158          DOI: 10.1016/S0006-3495(91)82235-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  12 in total

Review 1.  Free energy via molecular simulation: applications to chemical and biomolecular systems.

Authors:  D L Beveridge; F M DiCapua
Journal:  Annu Rev Biophys Biophys Chem       Date:  1989

2.  A physical model of sodium channel gating.

Authors:  D T Edmonds
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

Review 3.  An introduction to molecular architecture and permeability of ion channels.

Authors:  G Eisenman; J A Dani
Journal:  Annu Rev Biophys Biophys Chem       Date:  1987

4.  Ion-channel entrances influence permeation. Net charge, size, shape, and binding considerations.

Authors:  J A Dani
Journal:  Biophys J       Date:  1986-03       Impact factor: 4.033

5.  Structural parts involved in activation and inactivation of the sodium channel.

Authors:  W Stühmer; F Conti; H Suzuki; X D Wang; M Noda; N Yahagi; H Kubo; S Numa
Journal:  Nature       Date:  1989-06-22       Impact factor: 49.962

6.  Solute inaccessible aqueous volume changes during opening of the potassium channel of the squid giant axon.

Authors:  J Zimmerberg; F Bezanilla; V A Parsegian
Journal:  Biophys J       Date:  1990-05       Impact factor: 4.033

7.  Indications of the existence of ferroelectric units in excitable-membrane channels.

Authors:  H R Leuchtag
Journal:  J Theor Biol       Date:  1987-08-07       Impact factor: 2.691

8.  Solvation thermodynamics of biopolymers. I. Separation of the volume and surface interactions with estimates for proteins.

Authors:  A Ben-Naim; K L Ting; R L Jernigan
Journal:  Biopolymers       Date:  1989-07       Impact factor: 2.505

9.  Electrorheological effects and gating of membrane channels.

Authors:  M E Green
Journal:  J Theor Biol       Date:  1989-06-22       Impact factor: 2.691

10.  Negative conductance caused by entry of sodium and cesium ions into the potassium channels of squid axons.

Authors:  F Bezanilla; C M Armstrong
Journal:  J Gen Physiol       Date:  1972-11       Impact factor: 4.086

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  5 in total

1.  Simulation of the role of water in ion channel gating.

Authors:  M E Green
Journal:  Biophys J       Date:  1992-04       Impact factor: 4.033

2.  The dielectric properties of water within model transbilayer pores.

Authors:  M S Sansom; G R Smith; C Adcock; P C Biggin
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

3.  The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics.

Authors:  R Sankararamakrishnan; C Adcock; M S Sansom
Journal:  Biophys J       Date:  1996-10       Impact factor: 4.033

4.  Voltage gating of Escherichia coli porin channels: role of the constriction loop.

Authors:  P S Phale; T Schirmer; A Prilipov; K L Lou; A Hardmeyer; J P Rosenbusch
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

5.  Molecular dynamics simulations of water within models of ion channels.

Authors:  J Breed; R Sankararamakrishnan; I D Kerr; M S Sansom
Journal:  Biophys J       Date:  1996-04       Impact factor: 4.033

  5 in total

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