Literature DB >> 17066276

Y-chromosomal microsatellite mutation rates in a population sample from northwestern Germany.

Carsten Hohoff1, Koji Dewa, Ulla Sibbing, Karolin Hoppe, Peter Forster, Bernd Brinkmann.   

Abstract

To estimate Y-chromosomal short tandem repeat (Y-STR) mutation rates, 15 loci (i.e., DYS19, DYS389 I/II, DYS390, and DYS393; DYS437, DYS438, DYS439, and DYS385; DYS391, DYS392, YCA II, and DXYS156) were analyzed in a sample of 1,029 father/son pairs from Westphalia, northwestern Germany. Among 15,435 meiotic allele transfers, 32 mutations were observed; thus, the mutation rate across all 15 Y-STR loci was 2.1 x 10(-3) per locus (95% C.I.: 1.5-3.0 x 10(-3)). With the exception of a three-repeat mutation at DYS385, all remaining mutations were single repeat mutations. Repeat losses were more frequent than gains (20:12), and the mutation rate appeared to increase with age. The Y haplogroups that were detected in the individuals showing a mutation reflect the haplogroup distribution in the Westphalian population. Additionally, the correlation of surnames and haplotypes was tested: Only 49 surnames occurred more than once, and only two men with the same rare surname shared the same haplotype. All other men with identical surnames carried different haplotypes.

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Year:  2006        PMID: 17066276     DOI: 10.1007/s00414-006-0123-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  21 in total

1.  Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs.

Authors:  M Kayser; L Roewer; M Hedman; L Henke; J Henke; S Brauer; C Krüger; M Krawczak; M Nagy; T Dobosz; R Szibor; P de Knijff; M Stoneking; A Sajantila
Journal:  Am J Hum Genet       Date:  2000-04-06       Impact factor: 11.025

2.  Mutation rates at two human Y-chromosomal microsatellite loci using small pool PCR techniques.

Authors:  U Holtkemper; B Rolf; C Hohoff; P Forster; B Brinkmann
Journal:  Hum Mol Genet       Date:  2001-03-15       Impact factor: 6.150

3.  DXYS156: a multi-purpose short tandem repeat locus for determination of sex, paternal and maternal geographic origins and DNA fingerprinting.

Authors:  Francesco Calì; P Forster; Christian Kersting; Mario G Mirisola; Rosalba D'Anna; Giacomo De Leo; Valentino Romano
Journal:  Int J Legal Med       Date:  2002-06       Impact factor: 2.686

4.  Y-chromosomal STR haplotypes in a population sample from southwest Germany (Freiburg area).

Authors:  Ulrike Schmidt; Nicola Meier; Sabine Lutz
Journal:  Int J Legal Med       Date:  2003-07-01       Impact factor: 2.686

5.  Significant genetic differentiation between Poland and Germany follows present-day political borders, as revealed by Y-chromosome analysis.

Authors:  Manfred Kayser; Oscar Lao; Katja Anslinger; Christa Augustin; Grazyna Bargel; Jeanett Edelmann; Sahar Elias; Marielle Heinrich; Jürgen Henke; Lotte Henke; Carsten Hohoff; Anett Illing; Anna Jonkisz; Piotr Kuzniar; Arleta Lebioda; Rüdiger Lessig; Slawomir Lewicki; Agnieszka Maciejewska; Dorota Marta Monies; Ryszard Pawłowski; Micaela Poetsch; Dagmar Schmid; Ulrike Schmidt; Peter M Schneider; Beate Stradmann-Bellinghausen; Reinhard Szibor; Rudolf Wegener; Marcin Wozniak; Magdalena Zoledziewska; Lutz Roewer; Tadeusz Dobosz; Rafal Ploski
Journal:  Hum Genet       Date:  2005-06-16       Impact factor: 4.132

6.  Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat.

Authors:  B Brinkmann; M Klintschar; F Neuhuber; J Hühne; B Rolf
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

7.  Twelve short tandem repeat loci Y chromosome haplotypes: genetic analysis on populations residing in North America.

Authors:  Bruce Budowle; Mike Adamowicz; Xavier G Aranda; Charles Barna; Ranajit Chakraborty; Dan Cheswick; Bradley Dafoe; Arthur Eisenberg; Roger Frappier; Ann Marie Gross; Carll Ladd; Hee-Suk Lee; Scott C Milne; Carole Meyers; Mechthild Prinz; Melanie L Richard; Gabriela Saldanha; Amy A Tierney; Lori Viculis; Benjamin E Krenke
Journal:  Forensic Sci Int       Date:  2005-05-28       Impact factor: 2.395

8.  Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees.

Authors:  E Heyer; J Puymirat; P Dieltjes; E Bakker; P de Knijff
Journal:  Hum Mol Genet       Date:  1997-05       Impact factor: 6.150

9.  Population and mutation analysis of 17 Y-STR loci from Rio de Janeiro (Brazil).

Authors:  Andréa Carla de Souza Góes; Elizeu Fagundes de Carvalho; Iva Gomes; Dayse Aparecida da Silva; Erica Helena Fonseca Gil; António Amorim; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2004-11-24       Impact factor: 2.686

10.  Mutation rates at Y chromosome specific microsatellites.

Authors:  L Gusmão; P Sánchez-Diz; F Calafell; P Martín; C A Alonso; F Alvarez-Fernández; C Alves; L Borjas-Fajardo; W R Bozzo; M L Bravo; J J Builes; J Capilla; M Carvalho; C Castillo; C I Catanesi; D Corach; A M Di Lonardo; R Espinheira; E Fagundes de Carvalho; M J Farfán; H P Figueiredo; I Gomes; M M Lojo; M Marino; M F Pinheiro; M L Pontes; V Prieto; E Ramos-Luis; J A Riancho; A C Souza Góes; O A Santapa; D R Sumita; G Vallejo; L Vidal Rioja; M C Vide; C I Vieira da Silva; M R Whittle; W Zabala; M T Zarrabeitia; A Alonso; A Carracedo; A Amorim
Journal:  Hum Mutat       Date:  2005-12       Impact factor: 4.878

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  19 in total

1.  Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.

Authors:  Arne Jochens; Amke Caliebe; Uwe Rösler; Michael Krawczak
Journal:  Genetics       Date:  2011-10-03       Impact factor: 4.562

2.  Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications.

Authors:  Kaye N Ballantyne; Miriam Goedbloed; Rixun Fang; Onno Schaap; Oscar Lao; Andreas Wollstein; Ying Choi; Kate van Duijn; Mark Vermeulen; Silke Brauer; Ronny Decorte; Micaela Poetsch; Nicole von Wurmb-Schwark; Peter de Knijff; Damian Labuda; Hélène Vézina; Hans Knoblauch; Rüdiger Lessig; Lutz Roewer; Rafal Ploski; Tadeusz Dobosz; Lotte Henke; Jürgen Henke; Manohar R Furtado; Manfred Kayser
Journal:  Am J Hum Genet       Date:  2010-09-10       Impact factor: 11.025

3.  Investigations of the Y chromosome, male founder structure and YSTR mutation rates in the Old Order Amish.

Authors:  Toni I Pollin; Daniel J McBride; Richa Agarwala; Alejandro A Schäffer; Alan R Shuldiner; Braxton D Mitchell; Jeffrey R O'Connell
Journal:  Hum Hered       Date:  2007-09-26       Impact factor: 0.444

4.  Genetic sub-structure in western Mediterranean populations revealed by 12 Y-chromosome STR loci.

Authors:  V Rodríguez; C Tomàs; J J Sánchez; J A Castro; M M Ramon; A Barbaro; N Morling; A Picornell
Journal:  Int J Legal Med       Date:  2008-12-06       Impact factor: 2.686

5.  Development of a Y-STR 12-plex PCR system and haplotype analysis in a Korean population.

Authors:  Sun Wha Park; Choon Hong Hwang; Eun Min Cho; Ji Hwan Park; Byung Ok Choi; Ki Wha Chung
Journal:  J Genet       Date:  2009-12       Impact factor: 1.166

6.  Haplotype-assisted characterization of germline mutations at short tandem repeat loci.

Authors:  Miriam Müller; Ulla Sibbing; Carsten Hohoff; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-11-11       Impact factor: 2.686

7.  Usefulness of SNPs as Supplementary Markers in a Paternity Case with 3 Genetic Incompatibilities at Autosomal and Y Chromosomal Loci.

Authors:  Iris Lindner; Nicole von Wurmb-Schwark; Patrick Meier; Rolf Fimmers; Andreas Büttner
Journal:  Transfus Med Hemother       Date:  2014-02-13       Impact factor: 3.747

8.  Mutation rates at 16 Y-chromosome STRs in the South China Han population.

Authors:  Weixia Weng; Hong Liu; Shuanglin Li; Jianye Ge; Huijun Wang; Chao Liu
Journal:  Int J Legal Med       Date:  2012-10-23       Impact factor: 2.686

9.  An X-STR meiosis study in Kurds and Germans: allele frequencies and mutation rates.

Authors:  T Fracasso; M Schürenkamp; B Brinkmann; C Hohoff
Journal:  Int J Legal Med       Date:  2008-04-04       Impact factor: 2.686

10.  Null allele sequence structure at the DYS448 locus and implications for profile interpretation.

Authors:  Bruce Budowle; Xavier G Aranda; Robert E Lagace; Lori K Hennessy; John V Planz; Manuel Rodriguez; Arthur J Eisenberg
Journal:  Int J Legal Med       Date:  2008-06-26       Impact factor: 2.686

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