Literature DB >> 17060607

Crystal structure of a photoactivated deprotonated intermediate of rhodopsin.

David Salom1, David T Lodowski, Ronald E Stenkamp, Isolde Le Trong, Marcin Golczak, Beata Jastrzebska, Tim Harris, Juan A Ballesteros, Krzysztof Palczewski.   

Abstract

The changes that lead to activation of G protein-coupled receptors have not been elucidated at the structural level. In this work we report the crystal structures of both ground state and a photoactivated deprotonated intermediate of bovine rhodopsin at a resolution of 4.15 A. In the photoactivated state, the Schiff base linking the chromophore and Lys-296 becomes deprotonated, reminiscent of the G protein-activating state, metarhodopsin II. The structures reveal that the changes that accompany photoactivation are smaller than previously predicted for the metarhodopsin II state and include changes on the cytoplasmic surface of rhodopsin that possibly enable the coupling to its cognate G protein, transducin. Furthermore, rhodopsin forms a potentially physiologically relevant dimer interface that involves helices I, II, and 8, and when taken with the prior work that implicates helices IV and V as the physiological dimer interface may account for one of the interfaces of the oligomeric structure of rhodopsin seen in the membrane by atomic force microscopy. The activation and oligomerization models likely extend to the majority of other G protein-coupled receptors.

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Year:  2006        PMID: 17060607      PMCID: PMC1637547          DOI: 10.1073/pnas.0608022103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Limited proteolytic digestion studies of G protein-receptor interactions.

Authors:  M R Mazzoni; H H Hamm
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

Review 2.  Activation of rhodopsin: new insights from structural and biochemical studies.

Authors:  T Okada; O P Ernst; K Palczewski; K P Hofmann
Journal:  Trends Biochem Sci       Date:  2001-05       Impact factor: 13.807

3.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

4.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

5.  Local peptide movement in the photoreaction intermediate of rhodopsin.

Authors:  Hitoshi Nakamichi; Tetsuji Okada
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

6.  Crystallographic analysis of primary visual photochemistry.

Authors:  Hitoshi Nakamichi; Tetsuji Okada
Journal:  Angew Chem Int Ed Engl       Date:  2006-06-26       Impact factor: 15.336

7.  Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.

Authors:  N Kunishima; Y Shimada; Y Tsuji; T Sato; M Yamamoto; T Kumasaka; S Nakanishi; H Jingami; K Morikawa
Journal:  Nature       Date:  2000-10-26       Impact factor: 49.962

8.  Equilibrium between metarhodopsin-I and metarhodopsin-II is dependent on the conformation of the third cytoplasmic loop.

Authors:  Chayne L Piscitelli; Thomas E Angel; Brian W Bailey; Paul Hargrave; Edward A Dratz; C Martin Lawrence
Journal:  J Biol Chem       Date:  2005-12-29       Impact factor: 5.157

Review 9.  The crystallographic model of rhodopsin and its use in studies of other G protein-coupled receptors.

Authors:  Slawomir Filipek; David C Teller; Krzysztof Palczewski; Ronald Stenkamp
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-05

10.  Projection structure of rhodopsin.

Authors:  G F Schertler; C Villa; R Henderson
Journal:  Nature       Date:  1993-04-22       Impact factor: 49.962

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  205 in total

1.  Post-translational modifications of the serotonin type 4 receptor heterologously expressed in mouse rod cells.

Authors:  David Salom; Benlian Wang; Zhiqian Dong; Wenyu Sun; Pius Padayatti; Steven Jordan; John A Salon; Krzysztof Palczewski
Journal:  Biochemistry       Date:  2011-12-20       Impact factor: 3.162

2.  Oligomeric forms of G protein-coupled receptors (GPCRs).

Authors:  Krzysztof Palczewski
Journal:  Trends Biochem Sci       Date:  2010-06-09       Impact factor: 13.807

Review 3.  Toward the fourth dimension of membrane protein structure: insight into dynamics from spin-labeling EPR spectroscopy.

Authors:  Hassane S McHaourab; P Ryan Steed; Kelli Kazmier
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

Review 4.  Chemistry and biology of vision.

Authors:  Krzysztof Palczewski
Journal:  J Biol Chem       Date:  2011-11-10       Impact factor: 5.157

Review 5.  The significance of G protein-coupled receptor crystallography for drug discovery.

Authors:  John A Salon; David T Lodowski; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2011-12       Impact factor: 25.468

Review 6.  New insights for drug design from the X-ray crystallographic structures of G-protein-coupled receptors.

Authors:  Kenneth A Jacobson; Stefano Costanzi
Journal:  Mol Pharmacol       Date:  2012-06-13       Impact factor: 4.436

7.  Homotrimer formation and dissociation of pharaonis halorhodopsin in detergent system.

Authors:  Takashi Tsukamoto; Takanori Sasaki; Kazuhiro J Fujimoto; Takashi Kikukawa; Masakatsu Kamiya; Tomoyasu Aizawa; Keiichi Kawano; Naoki Kamo; Makoto Demura
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

8.  Location of the retinal chromophore in the activated state of rhodopsin*.

Authors:  Shivani Ahuja; Evan Crocker; Markus Eilers; Viktor Hornak; Amiram Hirshfeld; Martine Ziliox; Natalie Syrett; Philip J Reeves; H Gobind Khorana; Mordechai Sheves; Steven O Smith
Journal:  J Biol Chem       Date:  2009-01-28       Impact factor: 5.157

9.  Structural and dynamic effects of cholesterol at preferred sites of interaction with rhodopsin identified from microsecond length molecular dynamics simulations.

Authors:  George Khelashvili; Alan Grossfield; Scott E Feller; Michael C Pitman; Harel Weinstein
Journal:  Proteins       Date:  2009-08-01

10.  Monomeric G protein-coupled receptor rhodopsin in solution activates its G protein transducin at the diffusion limit.

Authors:  Oliver P Ernst; Verena Gramse; Michael Kolbe; Klaus Peter Hofmann; Martin Heck
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-19       Impact factor: 11.205

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