Literature DB >> 17052116

Autonomously oscillating biochemical systems: parametric sensitivity of extrema and period.

B P Ingalls1.   

Abstract

This work addresses sensitivity analysis of autonomously oscillating biochemical systems. Building on results from the engineering literature, a general analysis is presented which addresses key features of oscillatory trajectories, namely the period and local maximum or minimum values of species concentrations and reaction rates. A discussion of sensitivity invariants generalises results from steady-state sensitivity analysis to this context. The results are illustrated by the application to a model of a circadian oscillator.

Mesh:

Year:  2004        PMID: 17052116     DOI: 10.1049/sb:20045005

Source DB:  PubMed          Journal:  Syst Biol (Stevenage)        ISSN: 1741-2471


  8 in total

1.  Isochron-based phase response analysis of circadian rhythms.

Authors:  Rudiyanto Gunawan; Francis J Doyle
Journal:  Biophys J       Date:  2006-06-30       Impact factor: 4.033

2.  Sensitivity Measures for Oscillating Systems: Application to Mammalian Circadian Gene Network.

Authors:  Stephanie R Taylor; Rudiyanto Gunawan; Linda R Petzold; Francis J Doyle
Journal:  IEEE Trans Automat Contr       Date:  2008-01-01       Impact factor: 5.792

3.  SENSITIVITY ANALYSIS FOR OSCILLATING DYNAMICAL SYSTEMS.

Authors:  A Katharina Wilkins; Bruce Tidor; Jacob White; Paul I Barton
Journal:  SIAM J Sci Comput       Date:  2009-06       Impact factor: 2.373

Review 4.  Recent developments in parameter estimation and structure identification of biochemical and genomic systems.

Authors:  I-Chun Chou; Eberhard O Voit
Journal:  Math Biosci       Date:  2009-03-25       Impact factor: 2.144

5.  An experimentally constrained computational model of NMDA oscillations in lamprey CPG neurons.

Authors:  Mikael Huss; Di Wang; Camilla Trané; Martin Wikström; Jeanette Hellgren Kotaleski
Journal:  J Comput Neurosci       Date:  2007-12-15       Impact factor: 1.621

6.  A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9.

Authors:  Melanie N Zeilinger; Eva M Farré; Stephanie R Taylor; Steve A Kay; Francis J Doyle
Journal:  Mol Syst Biol       Date:  2006-11-14       Impact factor: 11.429

7.  The Per2 negative feedback loop sets the period in the mammalian circadian clock mechanism.

Authors:  A Katharina Wilkins; Paul I Barton; Bruce Tidor
Journal:  PLoS Comput Biol       Date:  2007-12       Impact factor: 4.475

8.  Effective implicit finite-difference method for sensitivity analysis of stiff stochastic discrete biochemical systems.

Authors:  Monjur Morshed; Brian Ingalls; Silvana Ilie
Journal:  IET Syst Biol       Date:  2018-08       Impact factor: 1.615

  8 in total

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